Rh5BG519900

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000315
Physical Location & Seq
Forward (+)
82220321 .. 82222780
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG519900.1

Sequence Viewer

Length: 360 bp
ATGGATACCAATATCAACAGTGATCAGAGGCCTCCACAGGGTGGAGAAGCCCCAGATGACACCGGCAATTGGAGGATGTACTTGATGCCAGATTCAAGACAAAGAGTTGTCAACAAGATATTTGAAACGTTGAAGATGCATCTCCCCTTCTCTGGCCAAGAGGGGTTACTTGAACTGAAGAGAATTGGTTTAAGGTTTGAGGAAAAGGTGTATGCTACTGCATCAAGCCAGTCGGATTATCTACGAACTATTGCTCTGAAGATGCTTACCATTGAGGGCAAGGAAGTTGCAACCAGTCCCCCCTCCAACCTGAAACGGCATCGTGTCCTTGCTTTTGAAACAGAGTATCAAGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

119

Amino Acids

13.64

Weight (kDa)

6.74

Isoelectric Point (pI)

68.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 21 - 96 8.9e-27 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 41
AclI AACGTT 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 197, 278
AdeI CACNNNGTG 1 cut(s) 41
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 4 cut(s) 38, 41, 69, 152
AgsI TTSAA 5 cut(s) 96, 125, 133, 173, 338
AoxI GGCC 2 cut(s) 29, 154
BalI TGGCCA 1 cut(s) 156
BceAI ACGGC 1 cut(s) 332
BclI TGATCA 1 cut(s) 22
BmsI GCATC 6 cut(s) 75, 126, 148, 230, 252, 328
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 41, 69, 152
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 229, 294
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 4 cut(s) 38, 41, 69, 152
BseNI ACTGG 2 cut(s) 229, 294
BshFI GGCC 2 cut(s) 31, 156
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 4 cut(s) 38, 41, 69, 152
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 2 cut(s) 31, 156
Bsp143I GATC 1 cut(s) 22
BspANI GGCC 2 cut(s) 31, 156
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 2 cut(s) 229, 294
BssAI RCCGGY 1 cut(s) 62
BssMI GATC 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 173
BstF5I GGATG 1 cut(s) 81
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BsuRI GGCC 2 cut(s) 31, 156
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 62
Csp6I GTAC 1 cut(s) 79
CviJI RGCY 4 cut(s) 31, 50, 156, 228
CviKI_1 RGCY 4 cut(s) 31, 50, 156, 228
CviQI GTAC 1 cut(s) 79
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
DraIII CACNNNGTG 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco147I AGGCCT 1 cut(s) 31
Eco57I CTGAAG 2 cut(s) 197, 278
EcoT22I ATGCAT 1 cut(s) 141
FaiI YATR 1 cut(s) 213
FaqI GGGAC 1 cut(s) 282
FbaI TGATCA 1 cut(s) 22
FokI GGATG 1 cut(s) 88
HaeIII GGCC 2 cut(s) 31, 156
HapII CCGG 1 cut(s) 63
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 3 cut(s) 27, 235, 258
Hpy188III TCNNGA 1 cut(s) 96
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 3 cut(s) 139, 221, 290
HpySE526I ACGT 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 8 cut(s) 23, 66, 76, 102, 138, 242, 307, 323
LweI GCATC 6 cut(s) 75, 126, 148, 230, 252, 328
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 165
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 3 cut(s) 145, 190, 271
MfeI CAATTG 1 cut(s) 67
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 2 cut(s) 67, 183
MluNI TGGCCA 1 cut(s) 156
MmeI TCCRAC 2 cut(s) 213, 330
MnlI CCTC 7 cut(s) 21, 42, 66, 154, 193, 268, 313
Mox20I TGGCCA 1 cut(s) 156
Mph1103I ATGCAT 1 cut(s) 141
MscI TGGCCA 1 cut(s) 156
MseI TTAA 2 cut(s) 191, 358
Msp20I TGGCCA 1 cut(s) 156
MspI CCGG 1 cut(s) 63
MunI CAATTG 1 cut(s) 67
NdeII GATC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 141
PceI AGGCCT 1 cut(s) 31
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 41
Psp1406I AACGTT 1 cut(s) 128
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 2 cut(s) 191, 358
Sau3AI GATC 1 cut(s) 22
SetI ASST 4 cut(s) 131, 197, 210, 312
SfaNI GCATC 6 cut(s) 75, 126, 148, 230, 252, 328
Sse9I AATT 2 cut(s) 67, 183
SseBI AGGCCT 1 cut(s) 31
StuI AGGCCT 1 cut(s) 31
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 1 cut(s) 131
TasI AATT 2 cut(s) 67, 183
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 191, 358
Tru9I TTAA 2 cut(s) 191, 358
TscAI CASTG 1 cut(s) 25
TspRI CASTG 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.