Rh5BG520500

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000315
Physical Location & Seq
Forward (+)
82305363 .. 82308158
2796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG520500.1

Sequence Viewer

Length: 552 bp
ATGTGGTTTAACTTTTGTGTGAATCTCCTTGTCAAGTCGGATTATGAACGAAAAATTTCTCTGAAGTTGCTCACAATGGAGACCAAGTCGCAGAACACAAGGGGCAGCTCTATACAATTCAACTCAGCCAGCAATAGCAAGAGACTCCCCGATCCTGTTTTAATGAATACCAGTAACAATGGGTGGCCTCCTCAAGGTGGAGGACCATCTATGGACACATCAGATTGGAGTCAATTGCCGTCAGATGCACAACATGGATGGCAACAGGGAGCTCCCCAACAGCAACGGCAGCAAACCTCAAATTCTCAGCAGTACTATATTTACTCGCAGCAGTATATGTACCAGCAACAGTTACAACAACAACTCCTCCTTCAAAGTCATATTCAACTGCAACAAGAGCAGCAGCAGATTCCACTACAAAAAACTCAGTTGCAATCTTCTCAGCAATCAGCATCTGTTATGCAACCTTCGGTGGAGCCATTGCATCTCTCTGTGCAACCTTCTGAGCAATTGCCGCCAGATGCGCGACATAGAATTGTCAACAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

183

Amino Acids

21.03

Weight (kDa)

8.74

Isoelectric Point (pI)

74.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 526
AciI CCGC 1 cut(s) 515
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 2 cut(s) 54, 301
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 2 cut(s) 314, 341
AfiI CCNNNNNNNGG 2 cut(s) 194, 197
AgsI TTSAA 3 cut(s) 121, 374, 386
AluBI AGCT 2 cut(s) 108, 272
AluI AGCT 2 cut(s) 108, 272
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 74, 136
AlwI GGATC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 455
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 5 cut(s) 105, 289, 328, 400, 403
ApoI RAATTY 2 cut(s) 54, 301
Asp700I GAANNNNTTC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 1 cut(s) 203
AvaII GGWCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 5 cut(s) 117, 301, 340, 412, 415
BccI CCATC 2 cut(s) 214, 252
BceAI ACGGC 2 cut(s) 223, 302
BcoDI GTCTC 2 cut(s) 74, 136
BisI GCNGC 6 cut(s) 106, 290, 329, 401, 404, 515
BlsI GCNGC 6 cut(s) 107, 291, 330, 402, 405, 516
BmcAI AGTACT 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 477
BmsI GCATC 4 cut(s) 235, 461, 493, 511
BpuEI CTTGAG 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 74
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 348, 351, 378, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 197
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 479
BseGI GGATG 1 cut(s) 263
BseLI CCNNNNNNNGG 2 cut(s) 194, 197
BseMI GCAATG 1 cut(s) 479
BseMII CTCAG 5 cut(s) 138, 320, 440, 455, 495
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 180, 356
BseXI GCAGC 5 cut(s) 117, 301, 340, 412, 415
Bsh1236I CGCG 1 cut(s) 526
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 274
BslI CCNNNNNNNGG 2 cut(s) 194, 197
BsmAI GTCTC 2 cut(s) 74, 136
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 1 cut(s) 515
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 5 cut(s) 137, 319, 439, 454, 496
BspFNI CGCG 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 477
BspPI GGATC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 479
BsrI ACTGG 1 cut(s) 171
BssMI GATC 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 5 cut(s) 124, 306, 426, 441, 504
BstENI CCTNNNNNAGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 263
BstFNI CGCG 1 cut(s) 526
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 2 cut(s) 74, 136
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 4 cut(s) 289, 397, 514, 523
BstUI CGCG 1 cut(s) 526
BstV1I GCAGC 5 cut(s) 117, 301, 340, 412, 415
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 130
CaiI CAGNNNCTG 1 cut(s) 455
CfoI GCGC 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 313, 340
CviAII CATG 1 cut(s) 254
CviJI RGCY 5 cut(s) 108, 128, 187, 272, 478
CviKI_1 RGCY 5 cut(s) 108, 128, 187, 272, 478
CviQI GTAC 2 cut(s) 313, 340
DdeI CTNAG 5 cut(s) 124, 306, 426, 441, 504
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 274
FaeI CATG 1 cut(s) 257
FatI CATG 1 cut(s) 253
Fnu4HI GCNGC 6 cut(s) 106, 290, 329, 401, 404, 515
FokI GGATG 1 cut(s) 270
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 6 cut(s) 106, 290, 329, 401, 404, 515
GlaI GCGC 1 cut(s) 525
GluI GCNGC 6 cut(s) 106, 290, 329, 401, 404, 515
HaeIII GGCC 1 cut(s) 187
HhaI GCGC 1 cut(s) 526
Hin1II CATG 1 cut(s) 257
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HinfI GANTC 4 cut(s) 22, 144, 229, 409
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 5 cut(s) 40, 63, 223, 244, 505
Hpy8I GTNNAC 1 cut(s) 541
HpyAV CCTTC 3 cut(s) 380, 477, 510
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 6 cut(s) 248, 391, 433, 463, 484, 496
HpyF10VI GCNNNNNNNGC 4 cut(s) 289, 397, 514, 523
HpyF3I CTNAG 5 cut(s) 124, 306, 426, 441, 504
Hsp92II CATG 1 cut(s) 257
HspAI GCGC 1 cut(s) 524
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 3 cut(s) 269, 277, 475
LpnPI CCDG 6 cut(s) 142, 168, 184, 251, 356, 531
Lsp1109I GCAGC 5 cut(s) 117, 301, 340, 412, 415
LweI GCATC 4 cut(s) 235, 461, 493, 511
MaeIII GTNAC 2 cut(s) 173, 351
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 1 cut(s) 429
MfeI CAATTG 2 cut(s) 233, 509
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 6 cut(s) 54, 116, 233, 301, 509, 534
MlyI GAGTC 2 cut(s) 138, 238
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 5 cut(s) 194, 198, 201, 307, 377
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 2 cut(s) 9, 161
MunI CAATTG 2 cut(s) 233, 509
MvnI CGCG 1 cut(s) 526
MwoI GCNNNNNNNGC 4 cut(s) 289, 397, 514, 523
NdeII GATC 1 cut(s) 151
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 477
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 22, 409
PflFI GACNNNGTC 1 cut(s) 85
PkrI GCNGC 6 cut(s) 107, 291, 330, 402, 405, 516
PleI GAGTC 2 cut(s) 138, 237
PpsI GAGTC 2 cut(s) 138, 237
Psp124BI GAGCTC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 455
PsyI GACNNNGTC 1 cut(s) 85
RsaI GTAC 2 cut(s) 314, 341
RsaNI GTAC 2 cut(s) 313, 340
SacI GAGCTC 1 cut(s) 274
SaqAI TTAA 2 cut(s) 9, 161
SatI GCNGC 6 cut(s) 106, 290, 329, 401, 404, 515
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 203
ScaI AGTACT 1 cut(s) 314
SchI GAGTC 2 cut(s) 138, 238
SduI GDGCHC 1 cut(s) 274
SetI ASST 6 cut(s) 110, 199, 274, 299, 469, 502
SfaNI GCATC 4 cut(s) 235, 461, 493, 511
SinI GGWCC 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 6 cut(s) 54, 116, 233, 301, 509, 534
SsiI CCGC 1 cut(s) 515
SstI GAGCTC 1 cut(s) 274
TaaI ACNGT 1 cut(s) 351
TasI AATT 6 cut(s) 54, 116, 233, 301, 509, 534
TatI WGTACW 1 cut(s) 312
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 2 cut(s) 22, 409
Tru1I TTAA 2 cut(s) 9, 161
Tru9I TTAA 2 cut(s) 9, 161
TseI GCWGC 5 cut(s) 105, 289, 328, 400, 403
TspDTI ATGAA 2 cut(s) 60, 179
Tth111I GACNNNGTC 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 192
XapI RAATTY 2 cut(s) 54, 301
XmnI GAANNNNTTC 1 cut(s) 55
ZrmI AGTACT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.