RchiOBHm_Chr5g0075781

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000315
Physical Location & Seq
Forward (+)
81528781 .. 81531062
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35048

Sequence Viewer

Length: 513 bp
ATGGAAATAAAAGCCCAGCCTATGCAGAAGCCCACTAGGGGTACAACAGAAAACAAAATACAACCTTTAATTAGTGCTAAATCCACAAGAAAAGTCCATGGTCCAGTTCTTTATACAAATGCGGGATTCGTCTGCAATTATAGAAATGAAGTAAAGGTGACCAAGAAGTTAGTAAAATTCAGTGATCAGAGGCCTCCACAGGGTGGAGAAGCCTTGAATGGCGCCCGCGATTGGAGAATCTACTTGATGCCAGATTCAAGGCAAAGAATTGTCAGAAGATGTAAAACTGATGTGTTGAAGAGGCATCTTCCCTTCTCTGGCCAAGGGGGGTTACTTGAACGGCAGAGAATTGCTACAAGGTTCGAGGATAAGTTGTATGCTACTGCATCAAGCCAGTCGGATTATCTACAAAAAATTTCTCTGAAGTTGCTTGCCATTGAGACCGCGGGAGTTGCAACAAGTCCCCCCTCCAACCTGAAACGGCATCGTGCCCTTGCTTTTGAAAGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

170

Amino Acids

19.29

Weight (kDa)

10.34

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 76 - 149 6.4e-21 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccB7I CCANNNNNTGG 1 cut(s) 203
AccII CGCG 2 cut(s) 228, 446
AciI CCGC 4 cut(s) 122, 226, 444, 446
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 2 cut(s) 176, 414
AcuI CTGAAG 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 203
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 5 cut(s) 38, 200, 203, 231, 317
AgsI TTSAA 5 cut(s) 217, 258, 298, 338, 503
Alw26I GTCTC 2 cut(s) 434, 501
AoxI GGCC 2 cut(s) 191, 319
ApoI RAATTY 2 cut(s) 176, 414
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 493
BalI TGGCCA 1 cut(s) 321
BanI GGYRCC 1 cut(s) 221
BceAI ACGGC 2 cut(s) 356, 497
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 434, 501
BfaI CTAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 223
BmsI GCATC 4 cut(s) 237, 313, 395, 493
BsaHI GRCGYC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 97, 322, 444
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 200, 203, 231, 317
Bse1I ACTGG 2 cut(s) 104, 394
BseDI CCNNGG 3 cut(s) 97, 322, 444
BseLI CCNNNNNNNGG 5 cut(s) 38, 200, 203, 231, 317
BseNI ACTGG 2 cut(s) 104, 394
BseSI GKGCMC 1 cut(s) 493
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 2 cut(s) 228, 446
BshFI GGCC 2 cut(s) 193, 321
BshNI GGYRCC 1 cut(s) 221
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 5 cut(s) 38, 200, 203, 231, 317
BsmAI GTCTC 2 cut(s) 434, 501
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 2 cut(s) 193, 321
Bso31I GGTCTC 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 1 cut(s) 184
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 4 cut(s) 122, 226, 444, 446
BspANI GGCC 2 cut(s) 193, 321
BspFNI CGCG 2 cut(s) 228, 446
BspLI GGNNCC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 434
BsrI ACTGG 2 cut(s) 104, 394
BssECI CCNNGG 3 cut(s) 97, 322, 444
BssMI GATC 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 2 cut(s) 97, 322
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 226, 432
BstDSI CCRYGG 2 cut(s) 97, 444
BstEII GGTNACC 1 cut(s) 157
BstFNI CGCG 2 cut(s) 228, 446
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 2 cut(s) 434, 501
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstPI GGTNACC 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 493
BstUI CGCG 2 cut(s) 228, 446
BsuRI GGCC 2 cut(s) 193, 321
BtgI CCRYGG 2 cut(s) 97, 444
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 226, 432
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 101
Cfr42I CCGCGG 1 cut(s) 447
Csp6I GTAC 1 cut(s) 42
CviAII CATG 1 cut(s) 98
CviJI RGCY 7 cut(s) 14, 19, 31, 193, 212, 321, 393
CviKI_1 RGCY 7 cut(s) 14, 19, 31, 193, 212, 321, 393
CviQI GTAC 1 cut(s) 42
DinI GGCGCC 1 cut(s) 223
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
DraIII CACNNNGTG 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco130I CCWWGG 2 cut(s) 97, 322
Eco147I AGGCCT 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 443
Eco91I GGTNACC 1 cut(s) 157
EcoO65I GGTNACC 1 cut(s) 157
EcoT14I CCWWGG 2 cut(s) 97, 322
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 2 cut(s) 97, 322
FaeI CATG 1 cut(s) 101
FaiI YATR 5 cut(s) 23, 99, 114, 141, 378
FaqI GGGAC 1 cut(s) 447
FatI CATG 1 cut(s) 97
FauI CCCGC 3 cut(s) 115, 233, 439
FbaI TGATCA 1 cut(s) 184
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 223
GsaI CCCAGC 1 cut(s) 19
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 2 cut(s) 193, 321
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 3 cut(s) 126, 237, 254
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 4 cut(s) 189, 275, 400, 423
HpyAV CCTTC 1 cut(s) 322
HpyCH4V TGCA 4 cut(s) 25, 135, 386, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 222
KasI GGCGCC 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 184
KspI CCGCGG 1 cut(s) 447
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 7 cut(s) 29, 117, 185, 264, 303, 407, 488
LweI GCATC 4 cut(s) 237, 313, 395, 493
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 157, 330
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 3 cut(s) 288, 299, 310
MhlI GDGCHC 1 cut(s) 493
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 6 cut(s) 69, 136, 176, 267, 348, 414
MluNI TGGCCA 1 cut(s) 321
Mly113I GGCGCC 1 cut(s) 222
MmeI TCCRAC 2 cut(s) 378, 495
MnlI CCTC 5 cut(s) 183, 204, 294, 358, 478
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
MseI TTAA 1 cut(s) 68
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 446
MvnI CGCG 2 cut(s) 228, 446
MwoI GCNNNNNNNGC 1 cut(s) 452
NarI GGCGCC 1 cut(s) 222
NcoI CCATGG 1 cut(s) 97
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 157
PceI AGGCCT 1 cut(s) 193
PfeI GAWTC 3 cut(s) 126, 237, 254
PflMI CCANNNNNTGG 1 cut(s) 203
PluTI GGCGCC 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 101
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SacII CCGCGG 1 cut(s) 447
SaqAI TTAA 1 cut(s) 68
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 493
SetI ASST 4 cut(s) 67, 159, 362, 477
SfaNI GCATC 4 cut(s) 237, 313, 395, 493
SfoI GGCGCC 1 cut(s) 223
Sfr303I CCGCGG 1 cut(s) 447
SgrBI CCGCGG 1 cut(s) 447
SinI GGWCC 1 cut(s) 101
Sse9I AATT 6 cut(s) 69, 136, 176, 267, 348, 414
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 4 cut(s) 122, 226, 444, 446
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 1 cut(s) 36
StuI AGGCCT 1 cut(s) 193
StyI CCWWGG 2 cut(s) 97, 322
TaqI TCGA 1 cut(s) 363
TasI AATT 6 cut(s) 69, 136, 176, 267, 348, 414
TfiI GAWTC 3 cut(s) 126, 237, 254
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 2 cut(s) 176, 414
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.