Rw5G046340

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000315
Physical Location & Seq
Forward (+)
80511943 .. 80512270
328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046340.1

Sequence Viewer

Length: 189 bp
ATGGGATTACCAGAACTCGAGAGAATCGCAGCAACACTTGAGGAGAAGATATCTGCCGTTGCCTCAAGCCAGGCGGATTATCTGCGTAAAGTAAGTCTGAAGATGCTCACCATGGAGACGCAAATCACAGCTCCCCCATCCAATGACAGTTTGGAATCATTATTTGCTTCCCTGGATTTGCAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

62

Amino Acids

6.77

Weight (kDa)

4.4

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 2 - 47 3.7e-11 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 119
AjnI CCWGG 2 cut(s) 69, 171
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 17
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 145
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 71, 173
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 187
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 71, 173
BmeT110I CYCGRG 1 cut(s) 17
BmrFI CCNGG 2 cut(s) 71, 173
BmsI GCATC 1 cut(s) 93
BpuEI CTTGAG 2 cut(s) 49, 59
BsaJI CCNNGG 2 cut(s) 111, 171
BseBI CCWGG 2 cut(s) 71, 173
BseDI CCNNGG 2 cut(s) 111, 171
BseGI GGATG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 110
BsmBI CGTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 17
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 111, 171
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 71, 173
Bst4CI ACNGT 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 137
BstMAI GTCTC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 71, 173
BstSCI CCNGG 2 cut(s) 69, 171
BstV1I GCAGC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 137
CseI GACGC 1 cut(s) 127
CviAII CATG 1 cut(s) 112
CviJI RGCY 2 cut(s) 69, 131
CviKI_1 RGCY 2 cut(s) 69, 131
EciI GGCGGA 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 111
Eco32I GATATC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 69, 171
EcoRV GATATC 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 187
GluI GCNGC 1 cut(s) 30
HgaI GACGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 115
HinfI GANTC 2 cut(s) 24, 155
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 181
Hsp92II CATG 1 cut(s) 115
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 6 cut(s) 24, 56, 83, 158, 167, 185
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 93
MaeI CTAG 1 cut(s) 187
MboII GAAGA 2 cut(s) 58, 112
MnlI CCTC 2 cut(s) 34, 73
MspR9I CCNGG 2 cut(s) 71, 173
MvaI CCWGG 2 cut(s) 71, 173
NcoI CCATGG 1 cut(s) 111
NlaIII CATG 1 cut(s) 115
PaeR7I CTCGAG 1 cut(s) 17
PfeI GAWTC 2 cut(s) 24, 155
PkrI GCNGC 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 69, 171
PspGI CCWGG 2 cut(s) 69, 171
SatI GCNGC 1 cut(s) 30
ScrFI CCNGG 2 cut(s) 71, 173
SetI ASST 1 cut(s) 133
SfaNI GCATC 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 17
SmlI CTYRAG 3 cut(s) 17, 38, 64
SmoI CTYRAG 3 cut(s) 17, 38, 64
SsiI CCGC 1 cut(s) 74
SspMI CTAG 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 69, 171
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 18
TfiI GAWTC 2 cut(s) 24, 155
TseI GCWGC 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XhoI CTCGAG 1 cut(s) 17
XspI CTAG 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.