Rroxscaffold_5G00369260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000315
Physical Location & Seq
Forward (+)
51078511 .. 51081248
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00369260.1

Sequence Viewer

Length: 630 bp
ATGGACCCTTATGAAATCAACGTGGGCCTCGCGTTTTTGGGGAGAGTAAATTTCAGTTTCGACCCTGCACTGAGAAGATTCCTCCTTAAGAAGATCCCTCCTGAATCGTTCTTCAAGGAGATCTCTCTTACTTGGATTGCCTTTGAAGAGTTCCACTTTGTTGAGATCCTCCTCCAGAAGTTTTTCTTTATTGAGATTTTCCTTGAAGGGTGTCACCTTTTCTTAAAGAAGTTCACCTTAATGAGATCTTCCTGTCTTCCTCAAAGGAGTGGATACATTGAAGAGGCATCTTATTACTTTCTCCGGTCAAGGGGATTGCATGAACTCAAGCAAATTGCTGTCAGGTTTGAGGAGAAGATTTATATTGCTGCTACTAGCCAGGTTATTTCAGGGCTGATGGATGGGATGTTAACAAATGAGTTTGGGAAGGAAGAGTCATTAGCAAAAGGAGAAGATTGCATTATCAGACTTGAAGAGAAGAACACTGGATTTGATATTATTAGAAATCAAAGCCATGAAAACGAGCCGAGTCTAACAAGCACTTACACAAGAAACCTGGTACAAACACCGGATATCCTGTCTAAGCCTATACTAAACTCATTAAAGTCTAAAGGGACGCTCGCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

24.2

Weight (kDa)

5.9

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AclWI GGATC 2 cut(s) 88, 160
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 1 cut(s) 561
AfiI CCNNNNNNNGG 1 cut(s) 310
AflII CTTAAG 1 cut(s) 86
AgsI TTSAA 5 cut(s) 115, 146, 206, 281, 473
AjnI CCWGG 2 cut(s) 378, 555
AlwI GGATC 2 cut(s) 88, 160
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 4, 25
AsuHPI GGTGA 2 cut(s) 206, 226
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 355
BccI CCATC 2 cut(s) 391, 395
BciT130I CCWGG 2 cut(s) 380, 557
BciVI GTATCC 1 cut(s) 266
BfaI CTAG 1 cut(s) 375
BfrI CTTAAG 1 cut(s) 86
BfuI GTATCC 1 cut(s) 266
BglII AGATCT 2 cut(s) 120, 245
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
Bme1390I CCNGG 2 cut(s) 380, 557
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 25
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 380, 557
BmsI GCATC 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 311
BsaWI WCCGGW 2 cut(s) 303, 568
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 490
BseBI CCWGG 2 cut(s) 380, 557
BseGI GGATG 2 cut(s) 406, 411
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 2 cut(s) 161, 365
BseXI GCAGC 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 304, 569
BslI CCNNNNNNNGG 1 cut(s) 310
BsnI GGCC 1 cut(s) 27
Bsp143I GATC 4 cut(s) 93, 120, 165, 245
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 88, 160
BspTI CTTAAG 1 cut(s) 86
BsrI ACTGG 1 cut(s) 490
BssMI GATC 4 cut(s) 93, 120, 165, 245
Bst2UI CCWGG 2 cut(s) 380, 557
Bst6I CTCTTC 4 cut(s) 141, 276, 426, 468
BstAFI CTTAAG 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 621
BstDEI CTNAG 2 cut(s) 71, 582
BstF5I GGATG 2 cut(s) 406, 411
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 4 cut(s) 96, 123, 168, 248
BstMBI GATC 4 cut(s) 93, 120, 165, 245
BstNI CCWGG 2 cut(s) 380, 557
BstSCI CCNGG 2 cut(s) 378, 555
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 4 cut(s) 93, 120, 165, 245
BstYI RGATCY 4 cut(s) 93, 120, 165, 245
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 2 cut(s) 406, 411
BtsIMutI CAGTG 2 cut(s) 68, 483
Cac8I GCNNGC 1 cut(s) 621
Cfr13I GGNCC 2 cut(s) 4, 25
CseI GACGC 1 cut(s) 625
CsiI ACCWGGT 1 cut(s) 555
Csp6I GTAC 1 cut(s) 560
CviAII CATG 2 cut(s) 320, 515
CviJI RGCY 6 cut(s) 27, 378, 394, 513, 526, 586
CviKI_1 RGCY 6 cut(s) 27, 378, 394, 513, 526, 586
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 2 cut(s) 71, 582
DpnI GATC 4 cut(s) 95, 122, 167, 247
DpnII GATC 4 cut(s) 93, 120, 165, 245
Eam1104I CTCTTC 4 cut(s) 141, 276, 426, 468
EarI CTCTTC 4 cut(s) 141, 276, 426, 468
Eco32I GATATC 1 cut(s) 574
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 378, 555
EcoRV GATATC 1 cut(s) 574
FaeI CATG 2 cut(s) 323, 518
FaiI YATR 5 cut(s) 12, 321, 363, 516, 590
FalI AAGNNNNNCTT 4 cut(s) 170, 202, 221, 253
FatI CATG 2 cut(s) 319, 514
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 2 cut(s) 413, 418
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 1 cut(s) 375
GluI GCNGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 1 cut(s) 27
HapII CCGG 2 cut(s) 304, 569
HgaI GACGC 1 cut(s) 625
Hin1II CATG 2 cut(s) 323, 518
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 4 cut(s) 78, 104, 434, 529
HpaI GTTAAC 1 cut(s) 411
HpaII CCGG 2 cut(s) 304, 569
HphI GGTGA 2 cut(s) 206, 226
Hpy166II GTNNAC 2 cut(s) 234, 411
Hpy188I TCNGA 1 cut(s) 467
Hpy188III TCNNGA 2 cut(s) 101, 175
Hpy8I GTNNAC 2 cut(s) 234, 411
HpyAV CCTTC 2 cut(s) 200, 421
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 3 cut(s) 68, 319, 459
HpyF3I CTNAG 2 cut(s) 71, 582
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 2 cut(s) 323, 518
KspAI GTTAAC 1 cut(s) 411
Kzo9I GATC 4 cut(s) 93, 120, 165, 245
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 1 cut(s) 296
MabI ACCWGGT 1 cut(s) 555
MaeI CTAG 1 cut(s) 375
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 212
MalI GATC 4 cut(s) 95, 122, 167, 247
MboI GATC 4 cut(s) 93, 120, 165, 245
MflI RGATCY 4 cut(s) 93, 120, 165, 245
MluCI AATT 2 cut(s) 49, 333
MlyI GAGTC 2 cut(s) 443, 538
MnlI CCTC 8 cut(s) 38, 92, 108, 179, 182, 270, 277, 343
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 5 cut(s) 87, 224, 239, 410, 602
MslI CAYNNNNRTG 1 cut(s) 239
MspCI CTTAAG 1 cut(s) 86
MspI CCGG 2 cut(s) 304, 569
MspR9I CCNGG 2 cut(s) 380, 557
MvaI CCWGG 2 cut(s) 380, 557
MvnI CGCG 1 cut(s) 32
NdeII GATC 4 cut(s) 93, 120, 165, 245
NlaIII CATG 2 cut(s) 323, 518
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 552
NmuCI GTSAC 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 78, 104
PkrI GCNGC 1 cut(s) 370
PleI GAGTC 2 cut(s) 442, 537
PpsI GAGTC 2 cut(s) 442, 537
Psp6I CCWGG 2 cut(s) 378, 555
PspGI CCWGG 2 cut(s) 378, 555
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 25
PsuI RGATCY 4 cut(s) 93, 120, 165, 245
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 5 cut(s) 87, 224, 239, 410, 602
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 4 cut(s) 93, 120, 165, 245
Sau96I GGNCC 2 cut(s) 4, 25
SchI GAGTC 2 cut(s) 443, 538
ScrFI CCNGG 2 cut(s) 380, 557
SetI ASST 6 cut(s) 24, 219, 239, 347, 384, 558
SexAI ACCWGGT 1 cut(s) 555
SfaNI GCATC 1 cut(s) 296
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 86, 326
SmoI CTYRAG 2 cut(s) 86, 326
Sse9I AATT 2 cut(s) 49, 333
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 2 cut(s) 378, 555
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 60
TasI AATT 2 cut(s) 49, 333
TfiI GAWTC 2 cut(s) 78, 104
Tru1I TTAA 5 cut(s) 87, 224, 239, 410, 602
Tru9I TTAA 5 cut(s) 87, 224, 239, 410, 602
TscAI CASTG 2 cut(s) 75, 490
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 27, 336, 531
TspRI CASTG 2 cut(s) 75, 490
Vha464I CTTAAG 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.