MD07G1261500.v1.1

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000315
Physical Location & Seq
Forward (+)
32712518 .. 32713299
782 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1261500.v1.1.491

Sequence Viewer

Length: 348 bp
ATGCTCACCATAGAGACTAAATCTCAGACCGCAATCTTCCTCGCAGGTCTTGATGCAGCTTTGATGGATGACAATAATCAGAGACCTCCTGAAGGTGGAGAACCTTCAATGGAGGCAGGTTACTGGAGAAGCCAATTGCAGCTAGATTCACGACGCAGAATTATCGCCAAGATAACTGATACTTTAAAGGGGCACTTTCCCTTCAGTGGGTTTGAGGGATCACGTGAACTCGAGATGATTGCTGTTAGATTCGAGCAAAAGATATATGCTATTGCCTCAAGCCAGGTACTTCCACAACTCATGGAATCCAAATCTATTTTTGTGGCCTTGCAATATTGCAGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

116

Amino Acids

12.99

Weight (kDa)

5.81

Isoelectric Point (pI)

56.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 40 - 95 3.8e-15 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 35, 107
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 226
AcuI CTGAAG 2 cut(s) 111, 187
AcvI CACGTG 1 cut(s) 224
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 4 cut(s) 92, 95, 206, 207
AgsI TTSAA 1 cut(s) 108
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 2 cut(s) 59, 142
AluI AGCT 2 cut(s) 59, 142
Alw26I GTCTC 2 cut(s) 8, 76
AlwI GGATC 1 cut(s) 226
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 2 cut(s) 56, 139
AvaI CYCGRG 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 195
BbrPI CACGTG 1 cut(s) 224
BbvI GCAGC 2 cut(s) 68, 151
BccI CCATC 1 cut(s) 58
BcgI CGANNNNNNTGC 4 cut(s) 145, 179, 221, 255
BciT130I CCWGG 1 cut(s) 284
BcoDI GTCTC 2 cut(s) 8, 76
BfaI CTAG 1 cut(s) 143
BfuAI ACCTGC 2 cut(s) 35, 107
BisI GCNGC 2 cut(s) 57, 140
BlsI GCNGC 2 cut(s) 58, 141
Bme1390I CCNGG 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 262
BsaAI YACGTR 1 cut(s) 224
BsaI GGTCTC 1 cut(s) 76
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 95, 206, 207
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 4 cut(s) 92, 95, 206, 207
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 2 cut(s) 68, 151
BshFI GGCC 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 230
BslI CCNNNNNNNGG 4 cut(s) 92, 95, 206, 207
BsmAI GTCTC 2 cut(s) 8, 76
BsnI GGCC 1 cut(s) 326
Bso31I GGTCTC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 218
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 37
BspMI ACCTGC 2 cut(s) 35, 107
BspPI GGATC 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 128
BssMI GATC 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 284
BstBAI YACGTR 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 24
BstENI CCTNNNNNAGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 1 cut(s) 221
BstMAI GTCTC 2 cut(s) 8, 76
BstMBI GATC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 68, 151
BsuRI GGCC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 211
BveI ACCTGC 2 cut(s) 35, 107
CseI GACGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 287
CviAII CATG 1 cut(s) 301
CviJI RGCY 5 cut(s) 59, 132, 142, 282, 326
CviKI_1 RGCY 5 cut(s) 59, 132, 142, 282, 326
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 1 cut(s) 24
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
DraI TTTAAA 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 76
Eco57I CTGAAG 2 cut(s) 111, 187
Eco72I CACGTG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 230
EcoNI CCTNNNNNAGG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 282
FaeI CATG 1 cut(s) 304
FaiI YATR 4 cut(s) 11, 265, 267, 302
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 57, 140
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 57, 140
FspBI CTAG 1 cut(s) 143
GluI GCNGC 2 cut(s) 57, 140
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 1 cut(s) 326
HgaI GACGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 304
HinfI GANTC 3 cut(s) 146, 249, 305
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 2 cut(s) 27, 81
Hpy188III TCNNGA 4 cut(s) 50, 89, 150, 232
Hpy8I GTNNAC 1 cut(s) 227
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 3 cut(s) 86, 114, 211
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 4 cut(s) 56, 139, 331, 339
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 1 cut(s) 304
Kzo9I GATC 1 cut(s) 218
LpnPI CCDG 6 cut(s) 30, 102, 102, 109, 269, 296
Lsp1109I GCAGC 2 cut(s) 68, 151
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MboII GAAGA 1 cut(s) 28
MfeI CAATTG 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 2 cut(s) 134, 159
MnlI CCTC 5 cut(s) 50, 96, 106, 208, 286
MseI TTAA 2 cut(s) 185, 346
MspR9I CCNGG 1 cut(s) 284
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 284
NdeII GATC 1 cut(s) 218
NlaIII CATG 1 cut(s) 304
PaeR7I CTCGAG 1 cut(s) 230
PfeI GAWTC 3 cut(s) 146, 249, 305
PkrI GCNGC 2 cut(s) 58, 141
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 282
PspCI CACGTG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 282
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 185, 346
SatI GCNGC 2 cut(s) 57, 140
Sau3AI GATC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 1 cut(s) 195
SetI ASST 9 cut(s) 49, 61, 88, 97, 106, 121, 144, 226, 288
SfaNI GCATC 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 230, 277
SmoI CTYRAG 2 cut(s) 230, 277
Sse9I AATT 2 cut(s) 134, 159
SsiI CCGC 1 cut(s) 30
SspI AATATT 1 cut(s) 335
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 282
TaiI ACGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 231, 252
TasI AATT 2 cut(s) 134, 159
TfiI GAWTC 3 cut(s) 146, 249, 305
Tru1I TTAA 2 cut(s) 185, 346
Tru9I TTAA 2 cut(s) 185, 346
TscAI CASTG 1 cut(s) 211
TseI GCWGC 2 cut(s) 56, 139
TspRI CASTG 1 cut(s) 211
XagI CCTNNNNNAGG 1 cut(s) 90
XhoI CTCGAG 1 cut(s) 230
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.