Rh5BG520100

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000315
Physical Location & Seq
Forward (+)
82228136 .. 82229560
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG520100.1

Sequence Viewer

Length: 348 bp
ATGGATACCAATATCAACACTGATCAGAGGCCTCCACAGGGTGGAGAAGCCTCGCATGACGCCGGCGATTGGAGGATGTACCTGCTGCCAGATTCAAGGCAAAGAATTGTCAACAAGATATGTGATACGTTGAAGAGGCATCTCCCCTTCTCTGGCCAAGAGGGGTTGCTAGAACTGAAGAGAATTGCTTCAAGGTTTGAGGAAAAGGTGTATGCTACTGCATCAAGCCAGTCGGATTATCTACGAAAAATTTCTCTAAAGATGCTTAGCATGGAGGCCGCGGAAGTTGCAACCTATCCCCCCTCCAACCTGAAACGACATCGTGTCCTTGCTTTTGAAACAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

115

Amino Acids

13.15

Weight (kDa)

7.89

Isoelectric Point (pI)

59.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 22 - 94 1.5e-30 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 90
AccB7I CCANNNNNTGG 1 cut(s) 41
AccII CGCG 1 cut(s) 281
AciI CCGC 2 cut(s) 279, 281
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 60
AdeI CACNNNGTG 1 cut(s) 41
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 4 cut(s) 38, 41, 69, 152
AgsI TTSAA 4 cut(s) 96, 133, 192, 338
AhdI GACNNNNNGTC 1 cut(s) 323
AoxI GGCC 3 cut(s) 29, 154, 276
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 249
Asp700I GAANNNNTTC 2 cut(s) 187, 250
BalI TGGCCA 1 cut(s) 156
BbvI GCAGC 1 cut(s) 72
BclI TGATCA 1 cut(s) 22
BfaI CTAG 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 90
BisI GCNGC 2 cut(s) 86, 279
BlpI GCTNAGC 1 cut(s) 266
BlsI GCNGC 2 cut(s) 87, 280
BmeRI GACNNNNNGTC 1 cut(s) 323
BmsI GCATC 3 cut(s) 148, 230, 252
Bpu1102I GCTNAGC 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 41, 69, 152
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 4 cut(s) 38, 41, 69, 152
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 3 cut(s) 31, 156, 278
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 4 cut(s) 38, 41, 69, 152
BsnI GGCC 3 cut(s) 31, 156, 278
Bsp143I GATC 1 cut(s) 22
Bsp1720I GCTNAGC 1 cut(s) 266
BspACI CCGC 2 cut(s) 279, 281
BspANI GGCC 3 cut(s) 31, 156, 278
BspFNI CGCG 1 cut(s) 281
BspMI ACCTGC 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 22
BssNI GRCGYC 1 cut(s) 60
Bst6I CTCTTC 2 cut(s) 128, 173
BstACI GRCGYC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 266
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 281
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 72
BsuRI GGCC 3 cut(s) 31, 156, 278
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 62
Cfr42I CCGCGG 1 cut(s) 282
CseI GACGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 56, 271
CviJI RGCY 5 cut(s) 31, 50, 156, 228, 278
CviKI_1 RGCY 5 cut(s) 31, 50, 156, 228, 278
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 266
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
DraIII CACNNNGTG 1 cut(s) 41
DriI GACNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 128, 173
Eam1105I GACNNNNNGTC 1 cut(s) 323
EarI CTCTTC 2 cut(s) 128, 173
Eco147I AGGCCT 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 197
FaeI CATG 2 cut(s) 59, 274
FaiI YATR 4 cut(s) 57, 121, 213, 272
FatI CATG 2 cut(s) 55, 270
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 86, 279
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 2 cut(s) 86, 279
FspBI CTAG 1 cut(s) 170
GluI GCNGC 2 cut(s) 86, 279
HaeIII GGCC 3 cut(s) 31, 156, 278
HapII CCGG 1 cut(s) 63
HgaI GACGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 2 cut(s) 59, 274
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 27, 235
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 221, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 2 cut(s) 59, 274
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 22
KspI CCGCGG 1 cut(s) 282
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 7 cut(s) 23, 76, 95, 102, 138, 242, 323
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 3 cut(s) 148, 230, 252
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 128
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 2 cut(s) 145, 190
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 3 cut(s) 105, 183, 249
MluNI TGGCCA 1 cut(s) 156
MmeI TCCRAC 2 cut(s) 213, 330
MnlI CCTC 9 cut(s) 21, 42, 61, 66, 129, 154, 193, 268, 313
Mox20I TGGCCA 1 cut(s) 156
MreI CGCCGGCG 1 cut(s) 62
MroNI GCCGGC 1 cut(s) 62
MroXI GAANNNNTTC 2 cut(s) 187, 250
MscI TGGCCA 1 cut(s) 156
MseI TTAA 1 cut(s) 346
Msp20I TGGCCA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 63
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 287
NaeI GCCGGC 1 cut(s) 64
NdeII GATC 1 cut(s) 22
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 2 cut(s) 59, 274
PceI AGGCCT 1 cut(s) 31
PdiI GCCGGC 1 cut(s) 64
PdmI GAANNNNTTC 2 cut(s) 187, 250
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 2 cut(s) 87, 280
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SacII CCGCGG 1 cut(s) 282
SaqAI TTAA 1 cut(s) 346
SatI GCNGC 2 cut(s) 86, 279
Sau3AI GATC 1 cut(s) 22
SetI ASST 6 cut(s) 84, 131, 197, 210, 296, 312
SfaNI GCATC 3 cut(s) 148, 230, 252
Sfr303I CCGCGG 1 cut(s) 282
SgrAI CRCCGGYG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 282
Sse9I AATT 3 cut(s) 105, 183, 249
SseBI AGGCCT 1 cut(s) 31
SsiI CCGC 2 cut(s) 279, 281
SspMI CTAG 1 cut(s) 170
StuI AGGCCT 1 cut(s) 31
TaiI ACGT 1 cut(s) 131
TasI AATT 3 cut(s) 105, 183, 249
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TscAI CASTG 1 cut(s) 25
TseI GCWGC 1 cut(s) 85
TspRI CASTG 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 41
XapI RAATTY 1 cut(s) 249
XmnI GAANNNNTTC 2 cut(s) 187, 250
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.