MD03G1033500.v1.1

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000315
Physical Location & Seq
Reverse (-)
2678756 .. 2684468
5713 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1033500.v1.1.491

Sequence Viewer

Length: 222 bp
ATGCAGCAAAGGCTTCAAGCATCAGGTCAGATATCAGGAACCATGCTTCAAGCTCAAAATGTAATGGATCAGCAAAAGCAGTTATATCAATCTCAGAGACCCCTTGCTGAGACATCATCGACTTCTCTGGATTCCTCAGCTCAGGCTGGACATGCAAATGGGGGTGATTGGCAAGAGGAGGTCTATCAAAAAGTAAGATGTCCTGCCTTCTTGTCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

74

Amino Acids

8.06

Weight (kDa)

5.56

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 75
AgsI TTSAA 2 cut(s) 17, 50
AluBI AGCT 2 cut(s) 53, 140
AluI AGCT 2 cut(s) 53, 140
Alw26I GTCTC 2 cut(s) 91, 104
AlwI GGATC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 176
BbvCI CCTCAGC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 91, 104
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 40
BmsI GCATC 1 cut(s) 29
Bpu10I CCTNAGC 2 cut(s) 136, 141
BsaI GGTCTC 1 cut(s) 91
BseMII CTCAG 4 cut(s) 99, 107, 150, 155
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 16
BsmAI GTCTC 2 cut(s) 91, 104
Bso31I GGTCTC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 67
BspCNI CTCAG 4 cut(s) 100, 106, 149, 154
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 91
BssMI GATC 1 cut(s) 67
BstDEI CTNAG 4 cut(s) 93, 108, 136, 141
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 2 cut(s) 91, 104
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 10, 152
BstNSI RCATGY 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 16
CviAII CATG 2 cut(s) 43, 152
CviJI RGCY 4 cut(s) 13, 53, 140, 146
CviKI_1 RGCY 4 cut(s) 13, 53, 140, 146
DdeI CTNAG 4 cut(s) 93, 108, 136, 141
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 91
Eco32I GATATC 1 cut(s) 33
EcoRV GATATC 1 cut(s) 33
FaeI CATG 2 cut(s) 46, 155
FaiI YATR 3 cut(s) 44, 85, 153
FatI CATG 2 cut(s) 42, 151
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
Hin1II CATG 2 cut(s) 46, 155
HinfI GANTC 1 cut(s) 131
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 2 cut(s) 30, 96
Hpy188III TCNNGA 2 cut(s) 36, 128
HpyAV CCTTC 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 4, 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 152
HpyF3I CTNAG 4 cut(s) 93, 108, 136, 141
Hsp92II CATG 2 cut(s) 46, 155
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 6 cut(s) 9, 21, 113, 128, 132, 216
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 29
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MnlI CCTC 3 cut(s) 145, 169, 172
MslI CAYNNNNRTG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 10, 152
NdeII GATC 1 cut(s) 67
NlaIII CATG 2 cut(s) 46, 155
NlaIV GGNNCC 1 cut(s) 40
NspI RCATGY 1 cut(s) 155
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 156
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 67
SetI ASST 4 cut(s) 28, 55, 142, 183
SfaNI GCATC 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 156
TaqI TCGA 1 cut(s) 119
TfiI GAWTC 1 cut(s) 131
TseI GCWGC 1 cut(s) 4
XceI RCATGY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.