RchiOBHm_Chr5g0075831

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000315
Physical Location & Seq
Forward (+)
81564635 .. 81566520
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35053

Sequence Viewer

Length: 444 bp
ATGCAACCTCAAGTCACCAATCAAGGACAACTCTTATCAGAGAACATTCAAAGTAACATTCCGCCTGCTGGAGTTCAAAATTCTGCTGGCTTATCATCTGCACTAACCCCTACCTCTGGGCCCGGCTTATCATCTGTACTAGCTCCTACCCCGGCACTAAATACGTCTGCCTTACTATCTGCACCCCCACCCCCCCGGGCCCCCGGTAGAAATATACCTGCTAGCTTATCATCTGCGTTACATTCTCCACATGAATATGATTCTCATCTACAACAGCAAACATCCGACCAGCATCAGAAGCTGAGCATGTATAAGAACATGCTGGAGCGCCTCATAACTTTCTTACACTATTCCAAAACTGATATTTCACTTGGTTTGAAGGAGAAATTGGTTTCGTATGAGAAGCAGATAATAAATTTTATTAATACAAATAGACTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

147

Amino Acids

15.95

Weight (kDa)

9.4

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 226
AciI CCGC 1 cut(s) 62
AcsI RAATTY 2 cut(s) 79, 415
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 2 cut(s) 68, 116
AgsI TTSAA 3 cut(s) 50, 77, 379
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 3 cut(s) 143, 225, 301
AluI AGCT 3 cut(s) 143, 225, 301
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 195
AoxI GGCC 2 cut(s) 119, 198
ApaI GGGCCC 2 cut(s) 123, 202
ApoI RAATTY 2 cut(s) 79, 415
AseI ATTAAT 1 cut(s) 423
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 4 cut(s) 119, 120, 198, 199
AsuC2I CCSGG 5 cut(s) 123, 152, 196, 197, 204
AsuHPI GGTGA 1 cut(s) 7
AsuNHI GCTAGC 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 195
BaeGI GKGCMC 2 cut(s) 123, 202
BanII GRGCYC 2 cut(s) 123, 202
BcnI CCSGG 5 cut(s) 123, 152, 196, 197, 204
BfaI CTAG 2 cut(s) 140, 222
BfoI RGCGCY 1 cut(s) 331
BfuAI ACCTGC 1 cut(s) 226
BlpI GCTNAGC 1 cut(s) 302
Bme1390I CCNGG 5 cut(s) 123, 152, 196, 197, 204
BmeT110I CYCGRG 1 cut(s) 195
BmgT120I GGNCC 4 cut(s) 119, 120, 198, 199
BmiI GGNNCC 3 cut(s) 121, 200, 201
BmrFI CCNGG 5 cut(s) 123, 152, 196, 197, 204
BmsI GCATC 1 cut(s) 301
BmtI GCTAGC 1 cut(s) 225
BpmI CTGGAG 2 cut(s) 90, 344
Bpu1102I GCTNAGC 1 cut(s) 302
BpuMI CCSGG 5 cut(s) 123, 152, 196, 197, 204
BsaBI GATNNNNATC 1 cut(s) 264
BsaJI CCNNGG 4 cut(s) 150, 194, 195, 202
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 116
Bse8I GATNNNNATC 1 cut(s) 264
BseDI CCNNGG 4 cut(s) 150, 194, 195, 202
BseGI GGATG 1 cut(s) 281
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 68, 116
BseMII CTCAG 1 cut(s) 293
BseSI GKGCMC 2 cut(s) 123, 202
BsgI GTGCAG 2 cut(s) 84, 165
BshFI GGCC 2 cut(s) 121, 200
BsiHKCI CYCGRG 1 cut(s) 195
BsiSI CCGG 4 cut(s) 123, 152, 196, 204
BslI CCNNNNNNNGG 2 cut(s) 68, 116
BsnI GGCC 2 cut(s) 121, 200
BsoBI CYCGRG 1 cut(s) 195
Bsp120I GGGCCC 2 cut(s) 119, 198
Bsp1286I GDGCHC 2 cut(s) 123, 202
Bsp1720I GCTNAGC 1 cut(s) 302
BspACI CCGC 1 cut(s) 62
BspANI GGCC 2 cut(s) 121, 200
BspCNI CTCAG 1 cut(s) 294
BspLI GGNNCC 3 cut(s) 121, 200, 201
BspMI ACCTGC 1 cut(s) 226
BspOI GCTAGC 1 cut(s) 225
BssECI CCNNGG 4 cut(s) 150, 194, 195, 202
BstC8I GCNNGC 3 cut(s) 66, 88, 223
BstDEI CTNAG 2 cut(s) 302, 437
BstF5I GGATG 1 cut(s) 281
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNSI RCATGY 2 cut(s) 310, 322
BstSCI CCNGG 5 cut(s) 121, 150, 194, 195, 202
BstSLI GKGCMC 2 cut(s) 123, 202
BsuRI GGCC 2 cut(s) 121, 200
BtsCI GGATG 1 cut(s) 281
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 3 cut(s) 66, 88, 223
CaiI CAGNNNCTG 1 cut(s) 301
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 4 cut(s) 119, 120, 198, 199
Cfr9I CCCGGG 1 cut(s) 195
Csp6I GTAC 1 cut(s) 137
CviAII CATG 3 cut(s) 251, 307, 319
CviJI RGCY 7 cut(s) 90, 121, 126, 143, 200, 225, 301
CviKI_1 RGCY 7 cut(s) 90, 121, 126, 143, 200, 225, 301
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 2 cut(s) 302, 437
EciI GGCGGA 1 cut(s) 51
Eco24I GRGCYC 2 cut(s) 123, 202
Eco88I CYCGRG 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 199
EcoT38I GRGCYC 2 cut(s) 123, 202
FaeI CATG 3 cut(s) 254, 310, 322
FaiI YATR 8 cut(s) 215, 252, 258, 308, 312, 320, 335, 399
FatI CATG 3 cut(s) 250, 306, 318
FokI GGATG 1 cut(s) 268
FriOI GRGCYC 2 cut(s) 123, 202
FspBI CTAG 2 cut(s) 140, 222
GlaI GCGC 1 cut(s) 329
GsuI CTGGAG 2 cut(s) 90, 344
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 2 cut(s) 121, 200
HapII CCGG 4 cut(s) 123, 152, 196, 204
HhaI GCGC 1 cut(s) 330
Hin1II CATG 3 cut(s) 254, 310, 322
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HinfI GANTC 2 cut(s) 260, 435
HpaII CCGG 4 cut(s) 123, 152, 196, 204
HphI GGTGA 1 cut(s) 7
Hpy188I TCNGA 3 cut(s) 40, 286, 297
HpyAV CCTTC 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 3 cut(s) 4, 101, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 2 cut(s) 302, 437
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 3 cut(s) 254, 310, 322
HspAI GCGC 1 cut(s) 328
LmnI GCTCC 2 cut(s) 148, 325
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 140, 222
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 3 cut(s) 13, 53, 237
MhlI GDGCHC 2 cut(s) 123, 202
MluCI AATT 3 cut(s) 79, 386, 415
MlyI GAGTC 1 cut(s) 429
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 3 cut(s) 18, 124, 341
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 255
MspI CCGG 4 cut(s) 123, 152, 196, 204
MspR9I CCNGG 5 cut(s) 123, 152, 196, 197, 204
MwoI GCNNNNNNNGC 1 cut(s) 298
NciI CCSGG 5 cut(s) 123, 152, 196, 197, 204
NheI GCTAGC 1 cut(s) 221
NlaIII CATG 3 cut(s) 254, 310, 322
NlaIV GGNNCC 3 cut(s) 121, 200, 201
NmuCI GTSAC 1 cut(s) 13
NspI RCATGY 2 cut(s) 310, 322
PfeI GAWTC 1 cut(s) 260
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
PshBI ATTAAT 1 cut(s) 423
PspN4I GGNNCC 3 cut(s) 121, 200, 201
PspOMI GGGCCC 2 cut(s) 119, 198
PspPI GGNCC 4 cut(s) 119, 120, 198, 199
PstNI CAGNNNCTG 1 cut(s) 301
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 1 cut(s) 423
Sau96I GGNCC 4 cut(s) 119, 120, 198, 199
SchI GAGTC 1 cut(s) 429
ScrFI CCNGG 5 cut(s) 123, 152, 196, 197, 204
SduI GDGCHC 2 cut(s) 123, 202
SetI ASST 8 cut(s) 10, 116, 145, 167, 220, 227, 303, 443
SfaNI GCATC 1 cut(s) 301
SmaI CCCGGG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 3 cut(s) 79, 386, 415
SsiI CCGC 1 cut(s) 62
SspMI CTAG 2 cut(s) 140, 222
StyD4I CCNGG 5 cut(s) 121, 150, 194, 195, 202
TaiI ACGT 1 cut(s) 167
TasI AATT 3 cut(s) 79, 386, 415
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 267
TspMI CCCGGG 1 cut(s) 195
VspI ATTAAT 1 cut(s) 423
XapI RAATTY 2 cut(s) 79, 415
XceI RCATGY 2 cut(s) 310, 322
XmaI CCCGGG 1 cut(s) 195
XspI CTAG 2 cut(s) 140, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.