FvH4_3g42330

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000315
Physical Location & Seq
Reverse (-)
35337577 .. 35341950
4374 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42330.t4

Sequence Viewer

Length: 801 bp
ATGGATGCCGATATCAATAGTGAACAGAGGCCTCCACAGGCTGGAGAAGCCTCGAATGAGGCCGCCGATTGGAGGAATGACTTGATGCCAGATGCAAGGCAAAGAATTGTCAACAAGATAATTGATACGTTGAAGAGGCATCTCCCCTTCTCAGGCCAAGAGGGGTTACATGAACTACATAGAATTGCTGCAAGGTTTGAGGAAAAGGTATATGCTGCTGCATCAAGCCAGTATTGTGCAATTTTTTTTTTTTTCCAGACAGATTATCTACGACGTATTTGTATTAAGATGCTTACCATGGAGGCCAAGAAAGTTGCAACCAGTCCCCCGTCCAACTTGGAACGACTTCATGTCCTTGATGCCAATATCAACAGTGGTCAGAGGCCTCCACAGGGTGGAGAAGCCTTGAGTGACGCCGACGATTGGAGGATTAACTTTATGGCACATTCAAGGCAAAGAGTAGTTGTCAACATGATTGATCAGAGGCCTTCACAAGCTAGAGAAGCCTCGAATGAAGCCGGTGATTGGAGGATGGACATAAGGCCGGATTCAAGGCAAAGAATTGCCAACAAGATACTTGATACGTTGAAGAGGCATCTCCCCTTCTCAGGCCAAGAGGGGTTACATGAACTACATAGAATTGCTGCAAGGTTTGAGGAAAAGGTATATGCTGCTGCATCAAGCCAGTCGGATTATCTACGAAAAATTTCTTTAAAGATGCTTACCATGGAGTCTAGGGGATCCGGAGTTGTCCCCTCCAACCTGAAACGGCGTCGCATCCTTGCTGGTAAACCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

267

Amino Acids

30.35

Weight (kDa)

9.39

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 22 - 96 1.6e-30 KIX domain
KIX_2 PF16987 165 - 237 1.1e-30 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 41, 395
AccIII TCCGGA 1 cut(s) 743
AciI CCGC 1 cut(s) 63
AclWI GGATC 2 cut(s) 735, 748
AcsI RAATTY 1 cut(s) 705
AcyI GRCGYC 2 cut(s) 414, 772
AdeI CACNNNGTG 1 cut(s) 395
AfiI CCNNNNNNNGG 9 cut(s) 41, 69, 72, 152, 392, 395, 423, 525, 608
AgsI TTSAA 4 cut(s) 133, 450, 552, 589
AhdI GACNNNNNGTC 1 cut(s) 350
AluBI AGCT 1 cut(s) 497
AluI AGCT 1 cut(s) 497
AlwI GGATC 2 cut(s) 735, 748
Aor13HI TCCGGA 1 cut(s) 743
AoxI GGCC 8 cut(s) 29, 60, 154, 303, 383, 485, 542, 610
ApeKI GCWGC 6 cut(s) 188, 215, 218, 644, 671, 674
ApoI RAATTY 1 cut(s) 705
Asp700I GAANNNNTTC 2 cut(s) 345, 706
AsuHPI GGTGA 1 cut(s) 533
BamHI GGATCC 1 cut(s) 740
BbvI GCAGC 6 cut(s) 175, 202, 205, 631, 658, 661
BccI CCATC 1 cut(s) 526
BceAI ACGGC 1 cut(s) 785
BclI TGATCA 1 cut(s) 478
BfaI CTAG 2 cut(s) 498, 735
BisI GCNGC 7 cut(s) 63, 189, 216, 219, 645, 672, 675
BlsI GCNGC 7 cut(s) 64, 190, 217, 220, 646, 673, 676
BmeRI GACNNNNNGTC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 742
BpmI CTGGAG 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 427
BsaHI GRCGYC 2 cut(s) 414, 772
BsaJI CCNNGG 2 cut(s) 297, 726
BsaWI WCCGGW 1 cut(s) 743
Bsc4I CCNNNNNNNGG 9 cut(s) 41, 69, 72, 152, 392, 395, 423, 525, 608
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 3 cut(s) 229, 321, 685
BseAI TCCGGA 1 cut(s) 743
BseDI CCNNGG 2 cut(s) 297, 726
BseGI GGATG 3 cut(s) 10, 537, 777
BseLI CCNNNNNNNGG 9 cut(s) 41, 69, 72, 152, 392, 395, 423, 525, 608
BseMII CTCAG 2 cut(s) 165, 621
BseNI ACTGG 3 cut(s) 229, 321, 685
BseXI GCAGC 6 cut(s) 175, 202, 205, 631, 658, 661
BshFI GGCC 8 cut(s) 31, 62, 156, 305, 385, 487, 544, 612
BsiSI CCGG 3 cut(s) 519, 545, 744
BslFI GGGAC 2 cut(s) 309, 737
BslI CCNNNNNNNGG 9 cut(s) 41, 69, 72, 152, 392, 395, 423, 525, 608
BsmFI GGGAC 2 cut(s) 309, 737
BsnI GGCC 8 cut(s) 31, 62, 156, 305, 385, 487, 544, 612
Bsp13I TCCGGA 1 cut(s) 743
Bsp143I GATC 2 cut(s) 478, 740
Bsp19I CCATGG 2 cut(s) 297, 726
BspACI CCGC 1 cut(s) 63
BspANI GGCC 8 cut(s) 31, 62, 156, 305, 385, 487, 544, 612
BspCNI CTCAG 2 cut(s) 164, 620
BspEI TCCGGA 1 cut(s) 743
BspLI GGNNCC 1 cut(s) 742
BspPI GGATC 2 cut(s) 735, 748
BsrFI RCCGGY 1 cut(s) 518
BsrI ACTGG 3 cut(s) 229, 321, 685
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 2 cut(s) 297, 726
BssMI GATC 2 cut(s) 478, 740
BssNI GRCGYC 2 cut(s) 414, 772
BssT1I CCWWGG 2 cut(s) 297, 726
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 2 cut(s) 128, 584
BstACI GRCGYC 2 cut(s) 414, 772
BstDEI CTNAG 2 cut(s) 151, 607
BstDSI CCRYGG 2 cut(s) 297, 726
BstF5I GGATG 3 cut(s) 10, 537, 777
BstKTI GATC 2 cut(s) 481, 743
BstMBI GATC 2 cut(s) 478, 740
BstMWI GCNNNNNNNGC 2 cut(s) 47, 503
BstV1I GCAGC 6 cut(s) 175, 202, 205, 631, 658, 661
BstX2I RGATCY 1 cut(s) 740
BstYI RGATCY 1 cut(s) 740
BsuRI GGCC 8 cut(s) 31, 62, 156, 305, 385, 487, 544, 612
BtgI CCRYGG 2 cut(s) 297, 726
BtsCI GGATG 3 cut(s) 10, 537, 777
BtsIMutI CAGTG 1 cut(s) 379
Cfr10I RCCGGY 1 cut(s) 518
CseI GACGC 2 cut(s) 422, 761
CviAII CATG 6 cut(s) 170, 298, 350, 472, 626, 727
DdeI CTNAG 2 cut(s) 151, 607
DpnI GATC 2 cut(s) 480, 742
DpnII GATC 2 cut(s) 478, 740
DraI TTTAAA 1 cut(s) 714
DraIII CACNNNGTG 1 cut(s) 395
DriI GACNNNNNGTC 1 cut(s) 350
Eam1104I CTCTTC 2 cut(s) 128, 584
Eam1105I GACNNNNNGTC 1 cut(s) 350
EarI CTCTTC 2 cut(s) 128, 584
Eco130I CCWWGG 2 cut(s) 297, 726
Eco147I AGGCCT 3 cut(s) 31, 385, 487
Eco32I GATATC 1 cut(s) 13
EcoRV GATATC 1 cut(s) 13
EcoT14I CCWWGG 2 cut(s) 297, 726
ErhI CCWWGG 2 cut(s) 297, 726
FaeI CATG 6 cut(s) 173, 301, 353, 475, 629, 730
FaqI GGGAC 2 cut(s) 309, 737
FatI CATG 6 cut(s) 169, 297, 349, 471, 625, 726
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 7 cut(s) 63, 189, 216, 219, 645, 672, 675
FokI GGATG 3 cut(s) 17, 544, 764
Fsp4HI GCNGC 7 cut(s) 63, 189, 216, 219, 645, 672, 675
FspBI CTAG 2 cut(s) 498, 735
GluI GCNGC 7 cut(s) 63, 189, 216, 219, 645, 672, 675
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 8 cut(s) 31, 62, 156, 305, 385, 487, 544, 612
HapII CCGG 3 cut(s) 519, 545, 744
HgaI GACGC 2 cut(s) 422, 761
Hin1I GRCGYC 2 cut(s) 414, 772
Hin1II CATG 6 cut(s) 173, 301, 353, 475, 629, 730
HincII GTYRAC 2 cut(s) 112, 469
HindII GTYRAC 2 cut(s) 112, 469
HinfI GANTC 2 cut(s) 548, 731
HpaII CCGG 3 cut(s) 519, 545, 744
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 4 cut(s) 23, 112, 469, 791
Hpy188I TCNGA 3 cut(s) 381, 483, 691
Hpy188III TCNNGA 2 cut(s) 256, 744
Hpy8I GTNNAC 4 cut(s) 23, 112, 469, 791
Hpy99I CGWCG 3 cut(s) 276, 422, 777
HpyAV CCTTC 3 cut(s) 157, 498, 613
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 3 cut(s) 128, 274, 584
HpyCH4V TGCA 7 cut(s) 95, 191, 221, 239, 317, 647, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 503
HpyF3I CTNAG 2 cut(s) 151, 607
HpySE526I ACGT 3 cut(s) 128, 274, 584
Hsp92I GRCGYC 2 cut(s) 414, 772
Hsp92II CATG 6 cut(s) 173, 301, 353, 475, 629, 730
Kpn2I TCCGGA 1 cut(s) 743
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 2 cut(s) 478, 740
Lsp1109I GCAGC 6 cut(s) 175, 202, 205, 631, 658, 661
MaeI CTAG 2 cut(s) 498, 735
MaeII ACGT 3 cut(s) 128, 274, 584
MaeIII GTNAC 3 cut(s) 165, 410, 621
MalI GATC 2 cut(s) 480, 742
MboI GATC 2 cut(s) 478, 740
MboII GAAGA 2 cut(s) 145, 601
MflI RGATCY 1 cut(s) 740
MluCI AATT 7 cut(s) 105, 120, 183, 240, 561, 639, 705
MlyI GAGTC 1 cut(s) 740
MmeI TCCRAC 3 cut(s) 357, 669, 783
MroI TCCGGA 1 cut(s) 743
MroXI GAANNNNTTC 2 cut(s) 345, 706
MseI TTAA 3 cut(s) 285, 432, 713
MspI CCGG 3 cut(s) 519, 545, 744
MwoI GCNNNNNNNGC 2 cut(s) 47, 503
NcoI CCATGG 2 cut(s) 297, 726
NdeII GATC 2 cut(s) 478, 740
NlaIII CATG 6 cut(s) 173, 301, 353, 475, 629, 730
NlaIV GGNNCC 1 cut(s) 742
NmuCI GTSAC 1 cut(s) 410
PceI AGGCCT 3 cut(s) 31, 385, 487
PdmI GAANNNNTTC 2 cut(s) 345, 706
PfeI GAWTC 1 cut(s) 548
PflMI CCANNNNNTGG 2 cut(s) 41, 395
PkrI GCNGC 7 cut(s) 64, 190, 217, 220, 646, 673, 676
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
PspN4I GGNNCC 1 cut(s) 742
PsuI RGATCY 1 cut(s) 740
SaqAI TTAA 3 cut(s) 285, 432, 713
SatI GCNGC 7 cut(s) 63, 189, 216, 219, 645, 672, 675
Sau3AI GATC 2 cut(s) 478, 740
SchI GAGTC 1 cut(s) 740
SetI ASST 9 cut(s) 131, 197, 210, 277, 499, 587, 653, 666, 765
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 7 cut(s) 105, 120, 183, 240, 561, 639, 705
SseBI AGGCCT 3 cut(s) 31, 385, 487
SsiI CCGC 1 cut(s) 63
SspMI CTAG 2 cut(s) 498, 735
StuI AGGCCT 3 cut(s) 31, 385, 487
StyI CCWWGG 2 cut(s) 297, 726
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 3 cut(s) 131, 277, 587
TaqI TCGA 2 cut(s) 53, 509
TasI AATT 7 cut(s) 105, 120, 183, 240, 561, 639, 705
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 3 cut(s) 285, 432, 713
Tru9I TTAA 3 cut(s) 285, 432, 713
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 6 cut(s) 188, 215, 218, 644, 671, 674
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 4 cut(s) 186, 338, 528, 642
TspRI CASTG 1 cut(s) 379
Van91I CCANNNNNTGG 2 cut(s) 41, 395
XapI RAATTY 1 cut(s) 705
XmnI GAANNNNTTC 2 cut(s) 345, 706
XspI CTAG 2 cut(s) 498, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.