pycom03g02580

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000315
Physical Location & Seq
Reverse (-)
1967406 .. 1970870
3465 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g02580.2

Sequence Viewer

Length: 1092 bp
ATGCCCATTGTAAGACTAAACGCACTCTTCCTCCTCGATAATATCGTTAAAAAAAAAAAAAAAGATAGAGTCAAGAACCATTTTTGTCCCCTTTGGCCTAATTTTGTTATTCGCAACTTTCTTTCCTTCTGGTCTGCAGCTCTTATCCTCAAAGTAATCGCTCTCGATCATCTGGATCAAGTTTTGATGAATACCAATATTCAGACCAGACCTCCTCAAGCTGGGGAACTTCCAATGGAGGCAGGTGATGATTGGAGGACGCAATTACAGTCAGAGTCACGACATAAAATTGTCGCAAAGATAATTGAAACGATGAAAAGGCACGTTCCCTTTGATGGTCCGGAGGGATTACGTGAAATCGAGAGGATTGCTGTAACGTTTGAGGAAAATATGTATGTTGGTGCCTCAAGTCAGACAGATTATTTACGGAAAATTTCTATCAAGATGCTCACCATGGAGACCAAATCTCAGATCGCAGTCTCCCACATAACTCTTAATCCAGTTTTGATGGATGGCATATATCAGAGACCTCCTGAAGGTGGAGAACCTTCAATGGAGACAGGTGATTGGAGGAGCCAAGTGCAGCTAGATTCACGACACAGAATTGTTGCTAAGATAATGGAAACATTAAAGAGGCACCTTCCCTTCAATGGGGAGGAGGGATTACTTGAACTCGAGAAGATTGCTGCAAGGTTTGAGGAAAAGATGTATGTTGCTGCCTCAAGCCAGTCGGATTATCTTCGGAAAATTTCTATGAAGATGCTCGCCATGGAAAACAAGTCTCAAGGTGGAGAAACTTCAATGGTCACAAGCAATTGGAGAAGCCAATTACAGCCAGATTCACGACACAGAATTATTGCCAAGATAACGGAAGTGTTGAGGAGGCACCTTCCCTTTACTGGTGAGGAGGGACTACATGAACTCGAGAGGATTGCTGTAAGGTTTGAGGAAAAAATCTATACTGTTGCCATCAGCCTGTCGGATTATCTACGGAAAATTTCTCTCAAGTTGCACACCATGGAGAACAAGTCTCAGACCGCAGCGTCCCCAACACCCAACTTGAACCTGAAACGGCGTCGTGTCTTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

364

Amino Acids

41.87

Weight (kDa)

9.52

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 233
AasI GACNNNNNNGTC 1 cut(s) 1042
Acc36I ACCTGC 1 cut(s) 233
AccB1I GGYRCC 3 cut(s) 401, 636, 885
AccIII TCCGGA 1 cut(s) 340
AciI CCGC 1 cut(s) 1038
AclI AACGTT 1 cut(s) 377
AclWI GGATC 1 cut(s) 183
AcsI RAATTY 3 cut(s) 432, 747, 996
AcuI CTGAAG 1 cut(s) 555
AcyI GRCGYC 1 cut(s) 1075
AfiI CCNNNNNNNGG 7 cut(s) 221, 335, 536, 539, 650, 651, 899
AgsI TTSAA 6 cut(s) 308, 552, 649, 671, 801, 1063
AluBI AGCT 3 cut(s) 140, 221, 586
AluI AGCT 3 cut(s) 140, 221, 586
Alw26I GTCTC 6 cut(s) 452, 484, 520, 551, 786, 1035
AlwI GGATC 1 cut(s) 183
Ama87I CYCGRG 2 cut(s) 674, 923
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 5 cut(s) 137, 583, 686, 716, 1040
ApoI RAATTY 3 cut(s) 432, 747, 996
AspS9I GGNCC 1 cut(s) 338
AsuHPI GGTGA 4 cut(s) 257, 442, 575, 914
AvaI CYCGRG 2 cut(s) 674, 923
AvaII GGWCC 1 cut(s) 338
BanI GGYRCC 3 cut(s) 401, 636, 885
BbvI GCAGC 5 cut(s) 149, 595, 673, 703, 1052
BccI CCATC 4 cut(s) 329, 502, 506, 977
BceAI ACGGC 1 cut(s) 1088
BcgI CGANNNNNNTGC 6 cut(s) 350, 384, 665, 699, 914, 948
BcoDI GTCTC 6 cut(s) 452, 484, 520, 551, 786, 1035
BfaI CTAG 1 cut(s) 587
BfmI CTRYAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 233
BisI GCNGC 5 cut(s) 138, 584, 687, 717, 1041
BlsI GCNGC 5 cut(s) 139, 585, 688, 718, 1042
Bme18I GGWCC 1 cut(s) 338
BmeT110I CYCGRG 2 cut(s) 674, 923
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 4 cut(s) 403, 575, 638, 887
BmsI GCATC 2 cut(s) 435, 750
BpuEI CTTGAG 5 cut(s) 201, 391, 706, 768, 989
BsaAI YACGTR 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 1075
BsaI GGTCTC 2 cut(s) 452, 520
BsaJI CCNNGG 3 cut(s) 453, 768, 1017
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 6 cut(s) 15, 45, 196, 226, 1013, 1043
Bsc4I CCNNNNNNNGG 7 cut(s) 221, 335, 536, 539, 650, 651, 899
Bse1I ACTGG 3 cut(s) 500, 727, 904
BseAI TCCGGA 1 cut(s) 340
BseDI CCNNGG 3 cut(s) 453, 768, 1017
BseGI GGATG 1 cut(s) 517
BseLI CCNNNNNNNGG 7 cut(s) 221, 335, 536, 539, 650, 651, 899
BseMII CTCAG 2 cut(s) 482, 1046
BseNI ACTGG 3 cut(s) 500, 727, 904
BseRI GAGGAG 6 cut(s) 23, 204, 586, 671, 895, 920
BseXI GCAGC 5 cut(s) 149, 595, 673, 703, 1052
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 602
BshFI GGCC 1 cut(s) 97
BshNI GGYRCC 3 cut(s) 401, 636, 885
BsiHKCI CYCGRG 2 cut(s) 674, 923
BsiSI CCGG 1 cut(s) 341
BslFI GGGAC 3 cut(s) 72, 924, 1030
BslI CCNNNNNNNGG 7 cut(s) 221, 335, 536, 539, 650, 651, 899
BsmAI GTCTC 6 cut(s) 452, 484, 520, 551, 786, 1035
BsmFI GGGAC 3 cut(s) 72, 924, 1030
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 2 cut(s) 452, 520
BsoBI CYCGRG 2 cut(s) 674, 923
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 3 cut(s) 166, 175, 471
Bsp19I CCATGG 3 cut(s) 453, 768, 1017
BspACI CCGC 1 cut(s) 1038
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 2 cut(s) 481, 1045
BspEI TCCGGA 1 cut(s) 340
BspLI GGNNCC 4 cut(s) 403, 575, 638, 887
BspMAI CTGCAG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 233
BspPI GGATC 1 cut(s) 183
BspT107I GGYRCC 3 cut(s) 401, 636, 885
BspTNI GGTCTC 2 cut(s) 452, 520
BsrI ACTGG 3 cut(s) 500, 727, 904
BssECI CCNNGG 3 cut(s) 453, 768, 1017
BssMI GATC 3 cut(s) 166, 175, 471
BssNI GRCGYC 1 cut(s) 1075
BssT1I CCWWGG 3 cut(s) 453, 768, 1017
Bst4CI ACNGT 2 cut(s) 270, 964
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 1075
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 765
BstDEI CTNAG 3 cut(s) 468, 612, 1032
BstDSI CCRYGG 3 cut(s) 453, 768, 1017
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 517
BstKTI GATC 3 cut(s) 169, 178, 474
BstMAI GTCTC 6 cut(s) 452, 484, 520, 551, 786, 1035
BstMBI GATC 3 cut(s) 166, 175, 471
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 5 cut(s) 149, 595, 673, 703, 1052
BsuRI GGCC 1 cut(s) 97
BtgI CCRYGG 3 cut(s) 453, 768, 1017
BtsCI GGATG 1 cut(s) 517
BveI ACCTGC 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 765
Cfr13I GGNCC 1 cut(s) 338
CseI GACGC 3 cut(s) 268, 1032, 1064
CviAII CATG 4 cut(s) 454, 769, 917, 1018
CviJI RGCY 9 cut(s) 97, 140, 221, 576, 586, 726, 825, 835, 975
CviKI_1 RGCY 9 cut(s) 97, 140, 221, 576, 586, 726, 825, 835, 975
DdeI CTNAG 3 cut(s) 468, 612, 1032
DpnI GATC 3 cut(s) 168, 177, 473
DpnII GATC 3 cut(s) 166, 175, 471
DrdI GACNNNNNNGTC 1 cut(s) 1042
DseDI GACNNNNNNGTC 1 cut(s) 1042
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 3 cut(s) 453, 768, 1017
Eco31I GGTCTC 2 cut(s) 452, 520
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 555
Eco88I CYCGRG 2 cut(s) 674, 923
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoT14I CCWWGG 3 cut(s) 453, 768, 1017
ErhI CCWWGG 3 cut(s) 453, 768, 1017
FaeI CATG 4 cut(s) 457, 772, 920, 1021
FaqI GGGAC 3 cut(s) 72, 924, 1030
FatI CATG 4 cut(s) 453, 768, 916, 1017
Fnu4HI GCNGC 5 cut(s) 138, 584, 687, 717, 1041
FokI GGATG 1 cut(s) 524
Fsp4HI GCNGC 5 cut(s) 138, 584, 687, 717, 1041
FspBI CTAG 1 cut(s) 587
GluI GCNGC 5 cut(s) 138, 584, 687, 717, 1041
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 341
HgaI GACGC 3 cut(s) 268, 1032, 1064
Hin1I GRCGYC 1 cut(s) 1075
Hin1II CATG 4 cut(s) 457, 772, 920, 1021
HinfI GANTC 4 cut(s) 69, 275, 590, 839
HpaII CCGG 1 cut(s) 341
HphI GGTGA 4 cut(s) 257, 442, 575, 914
Hpy188I TCNGA 9 cut(s) 204, 274, 414, 471, 525, 733, 744, 982, 1035
Hpy99I CGWCG 1 cut(s) 1080
HpyAV CCTTC 6 cut(s) 136, 530, 558, 650, 655, 899
HpyCH4III ACNGT 2 cut(s) 270, 964
HpyCH4IV ACGT 3 cut(s) 324, 352, 377
HpyCH4V TGCA 4 cut(s) 137, 583, 689, 1012
HpyF3I CTNAG 3 cut(s) 468, 612, 1032
HpySE526I ACGT 3 cut(s) 324, 352, 377
Hsp92I GRCGYC 1 cut(s) 1075
Hsp92II CATG 4 cut(s) 457, 772, 920, 1021
Kpn2I TCCGGA 1 cut(s) 340
Kzo9I GATC 3 cut(s) 166, 175, 471
LmnI GCTCC 1 cut(s) 573
Lsp1109I GCAGC 5 cut(s) 149, 595, 673, 703, 1052
LweI GCATC 2 cut(s) 435, 750
MaeI CTAG 1 cut(s) 587
MaeII ACGT 3 cut(s) 324, 352, 377
MaeIII GTNAC 3 cut(s) 276, 373, 805
MalI GATC 3 cut(s) 168, 177, 473
MboI GATC 3 cut(s) 166, 175, 471
MboII GAAGA 4 cut(s) 19, 691, 731, 769
MfeI CAATTG 1 cut(s) 814
MlyI GAGTC 2 cut(s) 78, 284
MmeI TCCRAC 2 cut(s) 711, 960
MroI TCCGGA 1 cut(s) 340
MseI TTAA 3 cut(s) 48, 495, 629
MspI CCGG 1 cut(s) 341
MunI CAATTG 1 cut(s) 814
NcoI CCATGG 3 cut(s) 453, 768, 1017
NdeII GATC 3 cut(s) 166, 175, 471
NlaIII CATG 4 cut(s) 457, 772, 920, 1021
NlaIV GGNNCC 4 cut(s) 403, 575, 638, 887
NmuCI GTSAC 2 cut(s) 276, 805
PaeR7I CTCGAG 2 cut(s) 674, 923
PaqCI CACCTGC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 2 cut(s) 590, 839
PkrI GCNGC 5 cut(s) 139, 585, 688, 718, 1042
PleI GAGTC 2 cut(s) 77, 283
PpsI GAGTC 2 cut(s) 77, 283
Ppu21I YACGTR 1 cut(s) 353
Psp1406I AACGTT 1 cut(s) 377
PspFI CCCAGC 1 cut(s) 221
PspN4I GGNNCC 4 cut(s) 403, 575, 638, 887
PspPI GGNCC 1 cut(s) 338
PstI CTGCAG 1 cut(s) 139
SaqAI TTAA 3 cut(s) 48, 495, 629
SatI GCNGC 5 cut(s) 138, 584, 687, 717, 1041
Sau3AI GATC 3 cut(s) 166, 175, 471
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 2 cut(s) 78, 284
SfaNI GCATC 2 cut(s) 435, 750
SfcI CTRYAG 1 cut(s) 135
Sfr274I CTCGAG 2 cut(s) 674, 923
SinI GGWCC 1 cut(s) 338
SlaI CTCGAG 2 cut(s) 674, 923
SmlI CTYRAG 7 cut(s) 216, 406, 674, 721, 783, 923, 1004
SmoI CTYRAG 7 cut(s) 216, 406, 674, 721, 783, 923, 1004
SsiI CCGC 1 cut(s) 1038
SspI AATATT 1 cut(s) 199
SspMI CTAG 1 cut(s) 587
StyI CCWWGG 3 cut(s) 453, 768, 1017
TaaI ACNGT 2 cut(s) 270, 964
TaiI ACGT 3 cut(s) 327, 355, 380
TaqI TCGA 5 cut(s) 36, 165, 360, 675, 924
TfiI GAWTC 2 cut(s) 590, 839
Tru1I TTAA 3 cut(s) 48, 495, 629
Tru9I TTAA 3 cut(s) 48, 495, 629
TseFI GTSAC 2 cut(s) 276, 805
TseI GCWGC 5 cut(s) 137, 583, 686, 716, 1040
Tsp45I GTSAC 2 cut(s) 276, 805
TspDTI ATGAA 4 cut(s) 203, 329, 770, 933
TspGWI ACGGA 3 cut(s) 442, 884, 1006
VpaK11BI GGWCC 1 cut(s) 338
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 3 cut(s) 432, 747, 996
XhoI CTCGAG 2 cut(s) 674, 923
XspI CTAG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.