Rh5AG506800

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000315
Physical Location & Seq
Forward (+)
85687625 .. 85690124
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG506800.1

Sequence Viewer

Length: 366 bp
ATGGATACCAATATCAGCAGTTATCAGAGGCCTCCAAAGGGTGGAGAAGCCTCGCATGACGCCGGCGATTGGAGGATGTACTTGATGCCAGATTCAAGGCAAATAATTGTCAACAAGATACTTGATACGTTGAAGAGGCATCTCCCCTTCTCTGGCCAAGAGGGGTTGCTTGAACTGAAGAGAATTGGTTTAAGGTTTGAGGAAAAGGTGTATGCTGCTGCATCAAGCCAGCTTGTTGGGTTGGTTGATTTAATGGATACCAATAATGAGAGGCCTCCTGAAGTTGGAGAACCTTTGTTGGACACATTAGATTGCAGGAGTCAATTTCCGGTAGATGCACGACCTAGAATTGTCAACAAGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

121

Amino Acids

13.69

Weight (kDa)

5.67

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 22 - 77 2e-17 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 197, 300
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 5 cut(s) 38, 41, 69, 152, 284
AgsI TTSAA 3 cut(s) 96, 133, 173
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
AoxI GGCC 3 cut(s) 29, 154, 272
ApeKI GCWGC 2 cut(s) 215, 218
BalI TGGCCA 1 cut(s) 156
BbvI GCAGC 2 cut(s) 202, 205
BciVI GTATCC 1 cut(s) 250
BfaI CTAG 1 cut(s) 345
BfuI GTATCC 1 cut(s) 250
BisI GCNGC 2 cut(s) 216, 219
BlsI GCNGC 2 cut(s) 217, 220
BmsI GCATC 4 cut(s) 75, 148, 230, 325
BsaHI GRCGYC 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 41, 69, 152, 284
Bse118I RCCGGY 1 cut(s) 62
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 5 cut(s) 38, 41, 69, 152, 284
BseXI GCAGC 2 cut(s) 202, 205
BshFI GGCC 3 cut(s) 31, 156, 274
BsiSI CCGG 2 cut(s) 63, 329
BslI CCNNNNNNNGG 5 cut(s) 38, 41, 69, 152, 284
BsnI GGCC 3 cut(s) 31, 156, 274
BspANI GGCC 3 cut(s) 31, 156, 274
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssNI GRCGYC 1 cut(s) 60
Bst6I CTCTTC 2 cut(s) 128, 173
BstACI GRCGYC 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 64, 230
BstF5I GGATG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 202, 205
BstXI CCANNNNNNTGG 1 cut(s) 236
BsuI GTATCC 1 cut(s) 250
BsuRI GGCC 3 cut(s) 31, 156, 274
BtsCI GGATG 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 64, 230
Cfr10I RCCGGY 1 cut(s) 62
CseI GACGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 56
CviJI RGCY 6 cut(s) 31, 50, 156, 228, 232, 274
CviKI_1 RGCY 6 cut(s) 31, 50, 156, 228, 232, 274
CviQI GTAC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 128, 173
EarI CTCTTC 2 cut(s) 128, 173
Eco147I AGGCCT 2 cut(s) 31, 274
Eco57I CTGAAG 2 cut(s) 197, 300
FaeI CATG 1 cut(s) 59
FaiI YATR 3 cut(s) 57, 213, 364
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 216, 219
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 2 cut(s) 216, 219
FspBI CTAG 1 cut(s) 345
GluI GCNGC 2 cut(s) 216, 219
HaeIII GGCC 3 cut(s) 31, 156, 274
HapII CCGG 2 cut(s) 63, 329
HgaI GACGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 59
HincII GTYRAC 2 cut(s) 112, 355
HindII GTYRAC 2 cut(s) 112, 355
HinfI GANTC 2 cut(s) 92, 319
HpaII CCGG 2 cut(s) 63, 329
Hpy166II GTNNAC 2 cut(s) 112, 355
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 2 cut(s) 112, 355
HpyAV CCTTC 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 3 cut(s) 221, 315, 338
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 59
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
LpnPI CCDG 7 cut(s) 76, 102, 138, 242, 291, 301, 342
Lsp1109I GCAGC 2 cut(s) 202, 205
LweI GCATC 4 cut(s) 75, 148, 230, 325
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 128
MboII GAAGA 2 cut(s) 145, 190
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 4 cut(s) 105, 183, 323, 348
MluNI TGGCCA 1 cut(s) 156
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 2 cut(s) 265, 279
MnlI CCTC 9 cut(s) 21, 42, 61, 66, 129, 154, 193, 264, 285
Mox20I TGGCCA 1 cut(s) 156
MreI CGCCGGCG 1 cut(s) 62
MroNI GCCGGC 1 cut(s) 62
MscI TGGCCA 1 cut(s) 156
MseI TTAA 2 cut(s) 191, 251
Msp20I TGGCCA 1 cut(s) 156
MspI CCGG 2 cut(s) 63, 329
NaeI GCCGGC 1 cut(s) 64
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 1 cut(s) 59
PceI AGGCCT 2 cut(s) 31, 274
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 2 cut(s) 217, 220
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 2 cut(s) 191, 251
SatI GCNGC 2 cut(s) 216, 219
SchI GAGTC 1 cut(s) 328
SetI ASST 6 cut(s) 131, 197, 210, 234, 295, 346
SfaNI GCATC 4 cut(s) 75, 148, 230, 325
SgrAI CRCCGGYG 1 cut(s) 62
Sse9I AATT 4 cut(s) 105, 183, 323, 348
SseBI AGGCCT 2 cut(s) 31, 274
SspMI CTAG 1 cut(s) 345
StuI AGGCCT 2 cut(s) 31, 274
TaiI ACGT 1 cut(s) 131
TasI AATT 4 cut(s) 105, 183, 323, 348
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 191, 251
Tru9I TTAA 2 cut(s) 191, 251
TseI GCWGC 2 cut(s) 215, 218
Van91I CCANNNNNTGG 1 cut(s) 41
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.