Rmu_sc0008562.1_g000002

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008562.1
OG0000315
Physical Location & Seq
Forward (+)
7310 .. 10699
3390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008562.1_g000002.1.cds

Sequence Viewer

Length: 642 bp
atgcgacagaaaacatcaacccggcgaccgtacttccagtcccagtctccccaggagccgactgcgagcacaaccgccactgttacttccactgaagcaaggcgcttgaagaagaagtcaggtcacgggactaccccaacgactgcaccccgcgatgctggcacgcctgcgcaaccactcgcccaaaagagactgtttgcacaccagctggttttggagccaaacactgtgaatgacagcgtacgagctacgttcaacctctctgtcttcatccccctgagactcaagattttgatggataccaatatcaacactgatcagaggcctccacagggtggagaagcctcgcatgacgccggcgattggaggatgtacctgctgccagattcaaggcaaagaattgtcaacaagatatgtgatacgttgaagaggcatctccccttctctggccaagaggggttgctagaactgaagagaattgcttcaaggtttgaggaaaaggtgtatgctactgcatcaagccagtcggattatctacgaaaaatttctctaaagatgcttagcatggaggccgcggaagttgcaacctatcccccctccaacctgaaacgacatcgtgtccttgcttttgaaacagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

213

Amino Acids

23.98

Weight (kDa)

9.99

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 171
Acc36I ACCTGC 1 cut(s) 384
AccB7I CCANNNNNTGG 1 cut(s) 335
AccII CGCG 2 cut(s) 153, 575
AciI CCGC 4 cut(s) 75, 151, 573, 575
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 1 cut(s) 543
AcuI CTGAAG 2 cut(s) 114, 491
AcyI GRCGYC 1 cut(s) 354
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 3 cut(s) 32, 243, 374
AfiI CCNNNNNNNGG 4 cut(s) 332, 335, 363, 446
AgsI TTSAA 6 cut(s) 109, 256, 390, 427, 486, 632
AhdI GACNNNNNGTC 1 cut(s) 617
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 2 cut(s) 208, 248
AluI AGCT 2 cut(s) 208, 248
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 3 cut(s) 51, 184, 274
AoxI GGCC 3 cut(s) 323, 448, 570
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 543
Asp700I GAANNNNTTC 2 cut(s) 481, 544
AspLEI GCGC 2 cut(s) 105, 172
AsuC2I CCSGG 1 cut(s) 22
BalI TGGCCA 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 366
BccI CCATC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 53
BciVI GTATCC 1 cut(s) 292
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 3 cut(s) 51, 184, 274
BfaI CTAG 1 cut(s) 464
BfoI RGCGCY 1 cut(s) 106
BfuAI ACCTGC 1 cut(s) 384
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 2 cut(s) 380, 573
BlpI GCTNAGC 1 cut(s) 560
BlsI GCNGC 2 cut(s) 381, 574
Bme1390I CCNGG 2 cut(s) 22, 53
BmeRI GACNNNNNGTC 1 cut(s) 617
BmiI GGNNCC 2 cut(s) 57, 219
BmrFI CCNGG 2 cut(s) 22, 53
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 4 cut(s) 145, 442, 524, 546
BmuI ACTGGG 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 259
Bpu1102I GCTNAGC 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 22
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 2 cut(s) 51, 573
Bsc4I CCNNNNNNNGG 4 cut(s) 332, 335, 363, 446
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 3 cut(s) 37, 43, 523
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 2 cut(s) 51, 573
BseGI GGATG 2 cut(s) 270, 375
BseLI CCNNNNNNNGG 4 cut(s) 332, 335, 363, 446
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 3 cut(s) 37, 43, 523
BseXI GCAGC 1 cut(s) 366
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 2 cut(s) 153, 575
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 3 cut(s) 325, 450, 572
BsiEI CGRYCG 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 2 cut(s) 22, 357
BsiWI CGTACG 1 cut(s) 241
BslFI GGGAC 2 cut(s) 25, 142
BslI CCNNNNNNNGG 4 cut(s) 332, 335, 363, 446
BsmAI GTCTC 3 cut(s) 51, 184, 274
BsmFI GGGAC 2 cut(s) 25, 142
BsnI GGCC 3 cut(s) 325, 450, 572
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 316
Bsp1720I GCTNAGC 1 cut(s) 560
BspACI CCGC 4 cut(s) 75, 151, 573, 575
BspANI GGCC 3 cut(s) 325, 450, 572
BspCNI CTCAG 1 cut(s) 270
BspFNI CGCG 2 cut(s) 153, 575
BspLI GGNNCC 2 cut(s) 57, 219
BspMI ACCTGC 1 cut(s) 384
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 3 cut(s) 37, 43, 523
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 51, 573
BssMI GATC 1 cut(s) 316
BssNI GRCGYC 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 4 cut(s) 30, 82, 195, 229
Bst6I CTCTTC 2 cut(s) 422, 467
BstACI GRCGYC 1 cut(s) 354
BstC8I GCNNGC 5 cut(s) 67, 160, 164, 168, 358
BstDEI CTNAG 2 cut(s) 278, 560
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 2 cut(s) 270, 375
BstFNI CGCG 2 cut(s) 153, 575
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 2 cut(s) 105, 172
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 3 cut(s) 51, 184, 274
BstMBI GATC 1 cut(s) 316
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 2 cut(s) 159, 581
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 2 cut(s) 20, 51
BstUI CGCG 2 cut(s) 153, 575
BstV1I GCAGC 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 259
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 3 cut(s) 325, 450, 572
BtgI CCRYGG 1 cut(s) 573
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 270, 375
BtsIMutI CAGTG 4 cut(s) 78, 90, 225, 312
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 5 cut(s) 67, 160, 164, 168, 358
CfoI GCGC 2 cut(s) 105, 172
Cfr10I RCCGGY 1 cut(s) 356
Cfr42I CCGCGG 1 cut(s) 576
CseI GACGC 1 cut(s) 362
Csp6I GTAC 3 cut(s) 31, 242, 373
CviAII CATG 2 cut(s) 350, 565
CviJI RGCY 9 cut(s) 58, 208, 220, 248, 325, 344, 450, 522, 572
CviKI_1 RGCY 9 cut(s) 58, 208, 220, 248, 325, 344, 450, 522, 572
CviQI GTAC 3 cut(s) 31, 242, 373
DdeI CTNAG 2 cut(s) 278, 560
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DraIII CACNNNGTG 1 cut(s) 335
DriI GACNNNNNGTC 1 cut(s) 617
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 2 cut(s) 422, 467
Eam1105I GACNNNNNGTC 1 cut(s) 617
EarI CTCTTC 2 cut(s) 422, 467
Eco147I AGGCCT 1 cut(s) 325
Eco57I CTGAAG 2 cut(s) 114, 491
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 2 cut(s) 353, 568
FaiI YATR 4 cut(s) 351, 415, 507, 566
FaqI GGGAC 2 cut(s) 25, 142
FatI CATG 2 cut(s) 349, 564
FauI CCCGC 1 cut(s) 158
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 380, 573
FokI GGATG 2 cut(s) 257, 382
Fsp4HI GCNGC 2 cut(s) 380, 573
FspBI CTAG 1 cut(s) 464
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 2 cut(s) 104, 171
GluI GCNGC 2 cut(s) 380, 573
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 3 cut(s) 325, 450, 572
HapII CCGG 2 cut(s) 22, 357
HgaI GACGC 1 cut(s) 362
HhaI GCGC 2 cut(s) 105, 172
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 2 cut(s) 353, 568
Hin6I GCGC 2 cut(s) 103, 170
HinP1I GCGC 2 cut(s) 103, 170
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 2 cut(s) 282, 386
HpaII CCGG 2 cut(s) 22, 357
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 2 cut(s) 321, 529
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 1 cut(s) 451
HpyCH4III ACNGT 4 cut(s) 30, 82, 195, 229
HpyCH4IV ACGT 2 cut(s) 251, 422
HpyCH4V TGCA 4 cut(s) 146, 200, 515, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 581
HpyF3I CTNAG 2 cut(s) 278, 560
HpySE526I ACGT 2 cut(s) 251, 422
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 2 cut(s) 353, 568
HspAI GCGC 2 cut(s) 103, 170
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 316
KspI CCGCGG 1 cut(s) 576
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 2 cut(s) 55, 217
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 4 cut(s) 145, 442, 524, 546
MaeI CTAG 1 cut(s) 464
MaeII ACGT 2 cut(s) 251, 422
MaeIII GTNAC 2 cut(s) 82, 122
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 5 cut(s) 121, 124, 259, 439, 484
MhlI GDGCHC 1 cut(s) 71
MlsI TGGCCA 1 cut(s) 450
MluCI AATT 3 cut(s) 399, 477, 543
MluNI TGGCCA 1 cut(s) 450
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 2 cut(s) 507, 624
Mox20I TGGCCA 1 cut(s) 450
MreI CGCCGGCG 1 cut(s) 356
MroNI GCCGGC 1 cut(s) 356
MroXI GAANNNNTTC 2 cut(s) 481, 544
MscI TGGCCA 1 cut(s) 450
MseI TTAA 1 cut(s) 640
Msp20I TGGCCA 1 cut(s) 450
MspA1I CMGCKG 2 cut(s) 208, 575
MspI CCGG 2 cut(s) 22, 357
MspR9I CCNGG 2 cut(s) 22, 53
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 2 cut(s) 153, 575
MwoI GCNNNNNNNGC 2 cut(s) 159, 581
NaeI GCCGGC 1 cut(s) 358
NciI CCSGG 1 cut(s) 22
NdeII GATC 1 cut(s) 316
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 2 cut(s) 353, 568
NlaIV GGNNCC 2 cut(s) 57, 219
NmuCI GTSAC 1 cut(s) 122
NsbI TGCGCA 1 cut(s) 171
PceI AGGCCT 1 cut(s) 325
PdiI GCCGGC 1 cut(s) 358
PdmI GAANNNNTTC 2 cut(s) 481, 544
PfeI GAWTC 1 cut(s) 386
Pfl23II CGTACG 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 2 cut(s) 381, 574
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspLI CGTACG 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 57, 219
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 3 cut(s) 32, 243, 374
RsaNI GTAC 3 cut(s) 31, 242, 373
SacII CCGCGG 1 cut(s) 576
SaqAI TTAA 1 cut(s) 640
SatI GCNGC 2 cut(s) 380, 573
Sau3AI GATC 1 cut(s) 316
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 2 cut(s) 22, 53
SduI GDGCHC 1 cut(s) 71
SfaNI GCATC 4 cut(s) 145, 442, 524, 546
Sfr303I CCGCGG 1 cut(s) 576
SgrAI CRCCGGYG 1 cut(s) 356
SgrBI CCGCGG 1 cut(s) 576
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 3 cut(s) 399, 477, 543
SseBI AGGCCT 1 cut(s) 325
SsiI CCGC 4 cut(s) 75, 151, 573, 575
SspMI CTAG 1 cut(s) 464
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 2 cut(s) 20, 51
TaaI ACNGT 4 cut(s) 30, 82, 195, 229
TaiI ACGT 2 cut(s) 254, 425
TasI AATT 3 cut(s) 399, 477, 543
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 1 cut(s) 640
Tru9I TTAA 1 cut(s) 640
TscAI CASTG 4 cut(s) 85, 97, 232, 319
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 259
TspRI CASTG 4 cut(s) 85, 97, 232, 319
Van91I CCANNNNNTGG 1 cut(s) 335
XapI RAATTY 1 cut(s) 543
XmnI GAANNNNTTC 2 cut(s) 481, 544
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.