FvH4_3g42361

Mediator of RNA polymerase II transcription subunit 15a-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
35366316 .. 35371689
5374 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42361.t1

Sequence Viewer

Length: 2664 bp
ATGTTGACGTCAGCAAAGTCTTTGTCTTTGCTTCTTTCTATAAAACAAGACTCTGTTGATTCCTACGCAGAGCAACTCGGTGACTTCCGTCTTGTCCACATTCCCCAGATCACTATCTTCCACCATTTTCAAGTCCCTCGAACTAAACGGTTCATGGATAACTACGATGGGAATCCTTCTCTAGGTGGAGAGCCTGCAATGGACACAGGAGATTGGAGGTGCCAATTGCAGGCAGATTCGCGGGAAAGAATTGTCAATAAGATATCGGGGACATTGAAGAGGCATCTTCCTTTGTCTGGTCAAGAGGGGTTAGTTGAACTCAAGAAAATTGCTGTAAGGTTTGAGGAAAAGATTTATGCTGCTGCGACAAGTCAGTCGGATTATCTACGGAAAATTTCTCTGAAGATGCTCACTATGGAGGCCAAGTCTCCAAATACAGTGACCAGTTCTTTACAATCCAACTCTGCTGGGTCTTCTGTTATGCAACCTCAAGTCACCAATCAAGGACAACTCTTATCAGAAAACATTCAAAGTAACATTCCGCATGCTGGAATTCAATTTTCTGCTGGTTTATCATCTGCACAAGCTCCTACCCCAGCTCTGAATATGTCTGCCTTACTATCTGCACTACCCCCTTCCCCTGGTACAGATATGCCTGCCAGCATATCATCTGTGTTACCTTCTCCACAGGGCATAAATATGTCTAGTTCATCATCTGAACTATTTCCTGCCTCCGGTCTAATTCAGTCCGAGTCATCTTCTGCTTTATCTCCTGCTTGGAGTCTAAATGTATTGGCTAATTATCCATTGGCATCTTCTCATCAATCTCATGTACAATCAGCATCTTTGGCAGAGCAATCTTTTAGGCTTCAGCAAAATCAACAATCAGCTATTCCCCACTTGACAGAATCCATGCTTCAGCAAACAACAATGCCACAACAGCATCAAGCGCAACAGTTAATAGCAACTCTGGATTCCACTGTCCAGATTGGAGCTGAATGGCAAGAGGAGGTCTATCAAAAGATAAAAGTCATGAAGGAGATGTACCTAACCAAACTAACTGAGATATACCAGAAAAATGCTATTAAACTAGAGCAGCTCGAATCTCTGCCACAACAGCCAAAGTCGTATCGGCTTGAGAAGCTGAAAATACATAAGACCATGCTGGAGCACCTGATAACAGTCTTACAGGTTTCCAAAAGTAACATTTCACCTGTTTTAAAGGGGAAGCTGGGTTTATACGAGAAGCAGATAATAAGTTTCATTAATACAAATAAACCCAAGAAACCTGATTCTTCTCTGCAGCAAGGGCAGCTCACCGTGCCCTCCATGGAGCACTCGCATTCCCAAGCTACTCAAGTGCAATCTCCTGAAAATCAAATGAACCCCCAACTGCAATCCAAGAACTTACAAAGTTCTGTACCAACAATGCAGCAGAACAATATCACGGGATTGCAGCAAAATTCCATATCTTCTTTATCTGGGGTTTCAACAGCACGGCGAAATAAGATGAATCCATTGCAGCCAAGCTCCAATATGGATCCAGGCCAGGGAACCTCACCAAATTCACTGCAGCAGGTACCTGTGGGCTCTATCCAACAAATTCCTGTCGGTGCTCCCCAACAAGCTAACATGAATGCCTTATCATCACAGAATGGGATTAACATGCTGCAGAACAACATTAATCCCCTTCAGTCAAATCCTGGTATTCTTCATAGCCAACATCTGAAACAGCAGGAACAGCAATTGTATCAGAATCAACTGATGCAACAATATCAACAACGAGTGATGCAGCAGCAGTTGTTGCAGCAGCGTTTGATGCAGCAGAAGTTGATGCAGAAGCAGCAGATAATTCAACAACAACAGCAGCTACAACAGCAAGCCAAGCAGCAGCTTCCTGGACAGTTGCAGGCTCACCAAATGCCACAGCTTCACCAAATCAGTGATGTTGATGATGTGAAAATTAGACCGGGGAGTGTTAAGCCAGGGACTTTTTTGTCAGGGGATGGCTTGCAGCAAAATTCTGTGTCTTCTTTGTCAGGTGTTTCAACTGCACAACAGAACATGATGAATCCATTGCAGTCAAGTTCCAACGCTGATCCAGGACAAGGAGTCTCACATCAGTTAAATGCCGGTTTCCTTCATAACCGATTTCTGCAGCAGCAACAGCAATTGAGACTGATGTTCCTCCAGAGTCAACAGCGACAGCTGCAGGAACAGTTGATGCAGAAGAATCAGATTTTTCAACAAAGACAACAGCAAGAGATACAGCACCTGCTTCGAAAGTTGGAGCCCGAGCTTCCCCAAGTCAATGTTGTTAATGACATGAACACGAGTGCTTTGTTATCATCACAGAGTGAGAGTAACATGCTGCAGGGAAGCATTGATTCCCTTAACTCAAGTTCTCGTATGGGTGATAATAAACAGCATCAGAAGCAAGAACAGGAGGAGAAAGTGTTTCAGAATCAACTCAAGCAACCGTATCAACAGCTACAGATGCAGCAGCAATGGACGCAGAAGCCGCAGATGCTTCAAGAAAAGCAACAGCAGCAGATACAGCAACTACAGCAACAAACAAAGCAGCAGTTGCATCATATTTATTTCATCTATCTCATTTTTCTCGCCATTTTGTTGGGCGCTTACCTTTTCGGGACAGGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

888

Amino Acids

99.4

Weight (kDa)

9.25

Isoelectric Point (pI)

70.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 69 - 147 2.3e-30 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2283
AasI GACNNNNNNGTC 2 cut(s) 373, 1996
AatII GACGTC 1 cut(s) 11
Acc36I ACCTGC 2 cut(s) 1567, 2283
Acc65I GGTACC 1 cut(s) 1579
AccB1I GGYRCC 2 cut(s) 219, 1579
AccII CGCG 1 cut(s) 241
AciI CCGC 3 cut(s) 241, 542, 2522
AclWI GGATC 3 cut(s) 1535, 1548, 2093
AcsI RAATTY 6 cut(s) 393, 552, 1462, 1564, 1602, 2020
AcuI CTGAAG 4 cut(s) 422, 854, 902, 1676
AcyI GRCGYC 1 cut(s) 8
AdeI CACNNNGTG 1 cut(s) 2357
AfaI GTAC 5 cut(s) 646, 834, 1046, 1422, 1581
AfiI CCNNNNNNNGG 8 cut(s) 182, 229, 296, 548, 641, 734, 1550, 2108
AhdI GACNNNNNGTC 1 cut(s) 2111
AjnI CCWGG 7 cut(s) 640, 1543, 1548, 1702, 1897, 1984, 2101
Alw21I GWGCWC 3 cut(s) 1173, 1338, 1618
Alw26I GTCTC 3 cut(s) 432, 2119, 2170
AlwI GGATC 3 cut(s) 1535, 1548, 2093
AlwNI CAGNNNCTG 1 cut(s) 2275
Ama87I CYCGRG 1 cut(s) 2294
AoxI GGCC 2 cut(s) 420, 1546
ApoI RAATTY 6 cut(s) 393, 552, 1462, 1564, 1602, 2020
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AseI ATTAAT 2 cut(s) 1266, 1683
Asp700I GAANNNNTTC 2 cut(s) 525, 723
Asp718I GGTACC 1 cut(s) 1579
AspLEI GCGC 2 cut(s) 952, 2639
AsuC2I CCSGG 1 cut(s) 1971
AsuHPI GGTGA 8 cut(s) 92, 487, 1203, 1309, 1551, 1907, 1925, 2426
AsuII TTCGAA 1 cut(s) 2281
AvaI CYCGRG 1 cut(s) 2294
BaeGI GKGCMC 1 cut(s) 1326
BamHI GGATCC 1 cut(s) 1540
BanI GGYRCC 2 cut(s) 219, 1579
BanII GRGCYC 2 cut(s) 1592, 2295
BarI GAAGNNNNNNTAC 2 cut(s) 1028, 1060
BauI CACGAG 1 cut(s) 2332
BbsI GAAGAC 2 cut(s) 465, 2022
Bbv12I GWGCWC 3 cut(s) 1173, 1338, 1618
BccI CCATC 2 cut(s) 161, 2000
BceAI ACGGC 1 cut(s) 1514
BcgI CGANNNNNNTGC 2 cut(s) 2261, 2295
BciT130I CCWGG 7 cut(s) 642, 1545, 1550, 1704, 1899, 1986, 2103
BcnI CCSGG 1 cut(s) 1971
BcoDI GTCTC 3 cut(s) 432, 2119, 2170
BfaI CTAG 3 cut(s) 182, 705, 1091
BfmI CTRYAG 8 cut(s) 1301, 1571, 1670, 2156, 2210, 2372, 2492, 2564
BfoI RGCGCY 1 cut(s) 2640
BfuAI ACCTGC 2 cut(s) 1567, 2283
Bme1390I CCNGG 8 cut(s) 642, 1545, 1550, 1704, 1899, 1971, 1986, 2103
BmeRI GACNNNNNGTC 1 cut(s) 2111
BmeT110I CYCGRG 1 cut(s) 2294
BmiI GGNNCC 5 cut(s) 221, 1542, 1555, 1581, 2292
BmrFI CCNGG 8 cut(s) 642, 1545, 1550, 1704, 1899, 1971, 1986, 2103
BoxI GACNNNNGTC 1 cut(s) 87
BpiI GAAGAC 2 cut(s) 465, 2022
BpmI CTGGAG 2 cut(s) 1187, 2174
Bpu14I TTCGAA 1 cut(s) 2281
BpuEI CTTGAG 6 cut(s) 305, 474, 1157, 1341, 2383, 2456
BpuMI CCSGG 1 cut(s) 1971
BsaBI GATNNNNATC 2 cut(s) 113, 171
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 5 cut(s) 640, 1329, 1549, 1970, 1985
BsaWI WCCGGW 1 cut(s) 734
BsaXI ACNNNNNCTCC 4 cut(s) 410, 440, 2441, 2471
Bsc4I CCNNNNNNNGG 8 cut(s) 182, 229, 296, 548, 641, 734, 1550, 2108
Bse118I RCCGGY 1 cut(s) 2132
Bse1I ACTGG 1 cut(s) 444
Bse3DI GCAATG 4 cut(s) 204, 1517, 2075, 2513
Bse8I GATNNNNATC 2 cut(s) 113, 171
BseBI CCWGG 7 cut(s) 642, 1545, 1550, 1704, 1899, 1986, 2103
BseDI CCNNGG 5 cut(s) 640, 1329, 1549, 1970, 1985
BseGI GGATG 1 cut(s) 2011
BseJI GATNNNNATC 2 cut(s) 113, 171
BseLI CCNNNNNNNGG 8 cut(s) 182, 229, 296, 548, 641, 734, 1550, 2108
BseMI GCAATG 4 cut(s) 204, 1517, 2075, 2513
BseMII CTCAG 1 cut(s) 1053
BseNI ACTGG 1 cut(s) 444
BseRI GAGGAG 2 cut(s) 1022, 2462
BseSI GKGCMC 1 cut(s) 1326
BseYI CCCAGC 3 cut(s) 467, 595, 1231
BsgI GTGCAG 3 cut(s) 564, 609, 2037
Bsh1236I CGCG 1 cut(s) 241
BshFI GGCC 2 cut(s) 422, 1548
BshNI GGYRCC 2 cut(s) 219, 1579
BsiHKAI GWGCWC 3 cut(s) 1173, 1338, 1618
BsiHKCI CYCGRG 1 cut(s) 2294
BsiSI CCGG 3 cut(s) 735, 1970, 2133
BslFI GGGAC 3 cut(s) 119, 283, 2002
BslI CCNNNNNNNGG 8 cut(s) 182, 229, 296, 548, 641, 734, 1550, 2108
BsmAI GTCTC 3 cut(s) 432, 2119, 2170
BsmFI GGGAC 3 cut(s) 119, 283, 2002
BsmI GAATGC 2 cut(s) 1342, 1642
BsnI GGCC 2 cut(s) 422, 1548
BsoBI CYCGRG 1 cut(s) 2294
Bsp119I TTCGAA 1 cut(s) 2281
Bsp1286I GDGCHC 6 cut(s) 1173, 1326, 1338, 1592, 1618, 2295
Bsp1407I TGTACA 1 cut(s) 832
Bsp143I GATC 3 cut(s) 108, 1540, 2098
Bsp19I CCATGG 1 cut(s) 1329
BspACI CCGC 3 cut(s) 241, 542, 2522
BspANI GGCC 2 cut(s) 422, 1548
BspCNI CTCAG 1 cut(s) 1054
BspFNI CGCG 1 cut(s) 241
BspHI TCATGA 1 cut(s) 1032
BspLI GGNNCC 5 cut(s) 221, 1542, 1555, 1581, 2292
BspMAI CTGCAG 6 cut(s) 1305, 1575, 1674, 2160, 2214, 2376
BspMI ACCTGC 2 cut(s) 1567, 2283
BspPI GGATC 3 cut(s) 1535, 1548, 2093
BspT104I TTCGAA 1 cut(s) 2281
BspT107I GGYRCC 2 cut(s) 219, 1579
BsrDI GCAATG 4 cut(s) 204, 1517, 2075, 2513
BsrFI RCCGGY 1 cut(s) 2132
BsrGI TGTACA 1 cut(s) 832
BsrI ACTGG 1 cut(s) 444
BssAI RCCGGY 1 cut(s) 2132
BssECI CCNNGG 5 cut(s) 640, 1329, 1549, 1970, 1985
BssMI GATC 3 cut(s) 108, 1540, 2098
BssNI GRCGYC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 2332
BssT1I CCWWGG 1 cut(s) 1329
Bst2BI CACGAG 1 cut(s) 2332
Bst2UI CCWGG 7 cut(s) 642, 1545, 1550, 1704, 1899, 1986, 2103
Bst4CI ACNGT 9 cut(s) 150, 439, 957, 982, 1183, 1321, 1905, 2220, 2481
Bst6I CTCTTC 1 cut(s) 272
BstACI GRCGYC 1 cut(s) 8
BstAPI GCANNNNNTGC 2 cut(s) 1804, 2587
BstAUI TGTACA 1 cut(s) 832
BstBI TTCGAA 1 cut(s) 2281
BstC8I GCNNGC 8 cut(s) 195, 231, 546, 657, 661, 1881, 1911, 2012
BstDEI CTNAG 1 cut(s) 1062
BstDSI CCRYGG 1 cut(s) 1329
BstENI CCTNNNNNAGG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 2011
BstFNI CGCG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 2640
BstHHI GCGC 2 cut(s) 952, 2639
BstKTI GATC 3 cut(s) 111, 1543, 2101
BstMAI GTCTC 3 cut(s) 432, 2119, 2170
BstMBI GATC 3 cut(s) 108, 1540, 2098
BstNI CCWGG 7 cut(s) 642, 1545, 1550, 1704, 1899, 1986, 2103
BstNSI RCATGY 3 cut(s) 548, 1669, 2371
BstPAI GACNNNNGTC 1 cut(s) 87
BstSCI CCNGG 8 cut(s) 640, 1543, 1548, 1702, 1897, 1969, 1984, 2101
BstSFI CTRYAG 8 cut(s) 1301, 1571, 1670, 2156, 2210, 2372, 2492, 2564
BstSLI GKGCMC 1 cut(s) 1326
BstUI CGCG 1 cut(s) 241
BstV2I GAAGAC 2 cut(s) 465, 2022
BstX2I RGATCY 1 cut(s) 1540
BstXI CCANNNNNNTGG 1 cut(s) 2632
BstYI RGATCY 1 cut(s) 1540
BsuRI GGCC 2 cut(s) 422, 1548
BtgI CCRYGG 1 cut(s) 1329
BtsCI GGATG 1 cut(s) 2011
BtsI GCAGTG 1 cut(s) 1568
BtsIMutI CAGTG 4 cut(s) 444, 978, 1568, 1948
BveI ACCTGC 2 cut(s) 1567, 2283
Cac8I GCNNGC 8 cut(s) 195, 231, 546, 657, 661, 1881, 1911, 2012
CaiI CAGNNNCTG 1 cut(s) 2275
CciI TCATGA 1 cut(s) 1032
CfoI GCGC 2 cut(s) 952, 2639
Cfr10I RCCGGY 1 cut(s) 2132
CseI GACGC 1 cut(s) 2521
Csp6I GTAC 5 cut(s) 645, 833, 1045, 1421, 1580
CviQI GTAC 5 cut(s) 645, 833, 1045, 1421, 1580
DdeI CTNAG 1 cut(s) 1062
DpnI GATC 3 cut(s) 110, 1542, 2100
DpnII GATC 3 cut(s) 108, 1540, 2098
DraI TTTAAA 1 cut(s) 1221
DraIII CACNNNGTG 1 cut(s) 2357
DrdI GACNNNNNNGTC 2 cut(s) 373, 1996
DriI GACNNNNNGTC 1 cut(s) 2111
DseDI GACNNNNNNGTC 2 cut(s) 373, 1996
Eam1104I CTCTTC 1 cut(s) 272
Eam1105I GACNNNNNGTC 1 cut(s) 2111
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 1329
Eco24I GRGCYC 2 cut(s) 1592, 2295
Eco32I GATATC 1 cut(s) 264
Eco57I CTGAAG 4 cut(s) 422, 854, 902, 1676
Eco88I CYCGRG 1 cut(s) 2294
EcoNI CCTNNNNNAGG 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 552
EcoRII CCWGG 7 cut(s) 640, 1543, 1548, 1702, 1897, 1984, 2101
EcoRV GATATC 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 1329
EcoT38I GRGCYC 2 cut(s) 1592, 2295
ErhI CCWWGG 1 cut(s) 1329
FaqI GGGAC 3 cut(s) 119, 283, 2002
FauI CCCGC 1 cut(s) 234
FokI GGATG 1 cut(s) 2018
FriOI GRGCYC 2 cut(s) 1592, 2295
FspBI CTAG 3 cut(s) 182, 705, 1091
GlaI GCGC 2 cut(s) 951, 2638
GsaI CCCAGC 3 cut(s) 471, 599, 1235
GsuI CTGGAG 2 cut(s) 1187, 2174
HaeII RGCGCY 1 cut(s) 2640
HaeIII GGCC 2 cut(s) 422, 1548
HapII CCGG 3 cut(s) 735, 1970, 2133
HgaI GACGC 1 cut(s) 2521
HhaI GCGC 2 cut(s) 952, 2639
Hin1I GRCGYC 1 cut(s) 8
Hin6I GCGC 2 cut(s) 950, 2637
HinP1I GCGC 2 cut(s) 950, 2637
HincII GTYRAC 2 cut(s) 6, 2198
HindII GTYRAC 2 cut(s) 6, 2198
HpaII CCGG 3 cut(s) 735, 1970, 2133
HphI GGTGA 8 cut(s) 92, 487, 1203, 1309, 1551, 1907, 1925, 2426
Hpy166II GTNNAC 3 cut(s) 6, 97, 2198
Hpy188III TCNNGA 9 cut(s) 302, 322, 971, 985, 1033, 1370, 2191, 2534, 2650
Hpy8I GTNNAC 3 cut(s) 6, 97, 2198
HpyAV CCTTC 6 cut(s) 186, 645, 690, 1030, 1700, 2150
HpyCH4III ACNGT 9 cut(s) 150, 439, 957, 982, 1183, 1321, 1905, 2220, 2481
HpyCH4IV ACGT 1 cut(s) 8
HpyF3I CTNAG 1 cut(s) 1062
HpySE526I ACGT 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 8
HspAI GCGC 2 cut(s) 950, 2637
KpnI GGTACC 1 cut(s) 1583
Kzo9I GATC 3 cut(s) 108, 1540, 2098
LmnI GCTCC 7 cut(s) 592, 992, 1168, 1333, 1535, 1621, 2290
MaeI CTAG 3 cut(s) 182, 705, 1091
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 7 cut(s) 80, 439, 493, 533, 675, 1202, 2363
MalI GATC 3 cut(s) 110, 1542, 2100
MboI GATC 3 cut(s) 108, 1540, 2098
MfeI CAATTG 3 cut(s) 224, 1745, 2171
MflI RGATCY 1 cut(s) 1540
MhlI GDGCHC 6 cut(s) 1173, 1326, 1338, 1592, 1618, 2295
MlyI GAGTC 5 cut(s) 44, 761, 790, 2121, 2203
MmeI TCCRAC 5 cut(s) 357, 483, 1621, 2115, 2268
MroXI GAANNNNTTC 2 cut(s) 525, 723
MslI CAYNNNNRTG 1 cut(s) 698
MspA1I CMGCKG 1 cut(s) 2209
MspI CCGG 3 cut(s) 735, 1970, 2133
MspR9I CCNGG 8 cut(s) 642, 1545, 1550, 1704, 1899, 1971, 1986, 2103
MunI CAATTG 3 cut(s) 224, 1745, 2171
Mva1269I GAATGC 2 cut(s) 1342, 1642
MvaI CCWGG 7 cut(s) 642, 1545, 1550, 1704, 1899, 1986, 2103
MvnI CGCG 1 cut(s) 241
NciI CCSGG 1 cut(s) 1971
NcoI CCATGG 1 cut(s) 1329
NdeII GATC 3 cut(s) 108, 1540, 2098
NlaIV GGNNCC 5 cut(s) 221, 1542, 1555, 1581, 2292
NmuCI GTSAC 3 cut(s) 80, 439, 493
NspI RCATGY 3 cut(s) 548, 1669, 2371
NspV TTCGAA 1 cut(s) 2281
PaeI GCATGC 1 cut(s) 548
PagI TCATGA 1 cut(s) 1032
PaqCI CACCTGC 1 cut(s) 2283
PctI GAATGC 2 cut(s) 1342, 1642
PdmI GAANNNNTTC 2 cut(s) 525, 723
PfoI TCCNGGA 2 cut(s) 1897, 2101
PleI GAGTC 5 cut(s) 44, 760, 789, 2120, 2202
PpsI GAGTC 5 cut(s) 44, 760, 789, 2120, 2202
PshAI GACNNNNGTC 1 cut(s) 87
PshBI ATTAAT 2 cut(s) 1266, 1683
Psp6I CCWGG 7 cut(s) 640, 1543, 1548, 1702, 1897, 1984, 2101
PspFI CCCAGC 3 cut(s) 467, 595, 1231
PspGI CCWGG 7 cut(s) 640, 1543, 1548, 1702, 1897, 1984, 2101
PspN4I GGNNCC 5 cut(s) 221, 1542, 1555, 1581, 2292
PstI CTGCAG 6 cut(s) 1305, 1575, 1674, 2160, 2214, 2376
PstNI CAGNNNCTG 1 cut(s) 2275
PsuI RGATCY 1 cut(s) 1540
PvuII CAGCTG 1 cut(s) 2209
RsaI GTAC 5 cut(s) 646, 834, 1046, 1422, 1581
RsaNI GTAC 5 cut(s) 645, 833, 1045, 1421, 1580
RseI CAYNNNNRTG 1 cut(s) 698
Sau3AI GATC 3 cut(s) 108, 1540, 2098
SchI GAGTC 5 cut(s) 44, 761, 790, 2121, 2203
ScrFI CCNGG 8 cut(s) 642, 1545, 1550, 1704, 1899, 1971, 1986, 2103
SduI GDGCHC 6 cut(s) 1173, 1326, 1338, 1592, 1618, 2295
SfcI CTRYAG 8 cut(s) 1301, 1571, 1670, 2156, 2210, 2372, 2492, 2564
SfuI TTCGAA 1 cut(s) 2281
SmiMI CAYNNNNRTG 1 cut(s) 698
SmlI CTYRAG 6 cut(s) 320, 489, 1136, 1356, 2398, 2471
SmoI CTYRAG 6 cut(s) 320, 489, 1136, 1356, 2398, 2471
SphI GCATGC 1 cut(s) 548
SsiI CCGC 3 cut(s) 241, 542, 2522
SspMI CTAG 3 cut(s) 182, 705, 1091
StyD4I CCNGG 8 cut(s) 640, 1543, 1548, 1702, 1897, 1969, 1984, 2101
StyI CCWWGG 1 cut(s) 1329
TaaI ACNGT 9 cut(s) 150, 439, 957, 982, 1183, 1321, 1905, 2220, 2481
TaiI ACGT 1 cut(s) 11
TaqI TCGA 3 cut(s) 139, 1101, 2281
TatI WGTACW 1 cut(s) 832
TauI GCSGC 1 cut(s) 2524
TscAI CASTG 4 cut(s) 444, 985, 1575, 1948
TseFI GTSAC 3 cut(s) 80, 439, 493
Tsp45I GTSAC 3 cut(s) 80, 439, 493
TspGWI ACGGA 2 cut(s) 77, 403
TspRI CASTG 4 cut(s) 444, 985, 1575, 1948
VspI ATTAAT 2 cut(s) 1266, 1683
XagI CCTNNNNNAGG 1 cut(s) 180
XapI RAATTY 6 cut(s) 393, 552, 1462, 1564, 1602, 2020
XceI RCATGY 3 cut(s) 548, 1669, 2371
XmnI GAANNNNTTC 2 cut(s) 525, 723
XspI CTAG 3 cut(s) 182, 705, 1091
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.