Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000315

Physical Location & Seq

Genomic Coordinates Forward (+)

82301676 .. 82302480

Gene Structure 805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036597

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATAACAACAATGGGAGTCCTCCTCAAGGGGGAGAGCCTGCAATTGATGCAGGAGATTGGAGGAGCCACTTGCAGGCAGATTCGCGGCAAAGAATTGTCATTAAGATAATGGATACATTGAAGAGGCATCTTCCTTTCTCCGGTCAAGAGGGATTGCATGAACTCAAGAAAATTGCTGTTAGGTTTGAGGAAAAGATTTATACTGCTGCCACAAGTCAGTCAGATTATCTACGGAAAATTTCTCTGAAGATGCTCACTATGGAGACCAAGTCTCAGACCACAATGGCCAATTCTTTACAATCCAACTCTGCTGGGTCTTCTGGTATGCAACCTCAAGTCACCAATCAAGGACAACTCTTATCAGAGACCATTCAAAGTAGCATTCCACCTGCTGGAGTTCAAAATTCTGCTGGCTTATTGACAGGACCCGCCCCGAATTTCACCCTGAAATCCGAGGTGGCCCTGTGGGGCCCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0014070 GO:0016592 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042304 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045723 GO:0045834 GO:0045923 GO:0045935 GO:0046677 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

161

Amino Acids

17.3

Weight (kDa)

8.02

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIX_2	PF16987	19 - 98	6.4e-35	KIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca	FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica	MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica	Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis	pycom03g02570 pycom03g02580
rosa_chinensis	RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata	RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora	Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa	Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha	Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana	Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
Acc36I	ACCTGC	1 cut(s)	400
AccB7I	CCANNNNNTGG	1 cut(s)	395
AccII	CGCG	1 cut(s)	88
AciI	CCGC	2 cut(s)	88, 432
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	3 cut(s)	240, 406, 439
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	5 cut(s)	29, 32, 76, 143, 395
AgsI	TTSAA	3 cut(s)	124, 377, 404
Alw26I	GTCTC	3 cut(s)	260, 279, 362
AoxI	GGCC	3 cut(s)	288, 462, 472
ApaI	GGGCCC	1 cut(s)	476
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	3 cut(s)	240, 406, 439
AspS9I	GGNCC	4 cut(s)	428, 463, 472, 473
AsuHPI	GGTGA	2 cut(s)	334, 436
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	476
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	196
BciVI	GTATCC	1 cut(s)	109
BcoDI	GTCTC	3 cut(s)	260, 279, 362
BfuAI	ACCTGC	1 cut(s)	400
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	2 cut(s)	89, 210
BlsI	GCNGC	2 cut(s)	90, 211
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	4 cut(s)	428, 463, 472, 473
BmiI	GGNNCC	4 cut(s)	68, 430, 473, 474
BmsI	GCATC	3 cut(s)	40, 139, 243
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	1 cut(s)	417
BpuEI	CTTGAG	3 cut(s)	12, 152, 321
BsaI	GGTCTC	2 cut(s)	260, 362
BsaJI	CCNNGG	1 cut(s)	456
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 32, 76, 143, 395
BseDI	CCNNGG	1 cut(s)	456
BseLI	CCNNNNNNNGG	5 cut(s)	29, 32, 76, 143, 395
BseMII	CTCAG	1 cut(s)	290
BseRI	GAGGAG	2 cut(s)	15, 79
BseSI	GKGCMC	1 cut(s)	476
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	3 cut(s)	290, 464, 474
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	5 cut(s)	29, 32, 76, 143, 395
BsmAI	GTCTC	3 cut(s)	260, 279, 362
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	3 cut(s)	290, 464, 474
Bso31I	GGTCTC	2 cut(s)	260, 362
Bsp120I	GGGCCC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	476
BspACI	CCGC	2 cut(s)	88, 432
BspANI	GGCC	3 cut(s)	290, 464, 474
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	4 cut(s)	68, 430, 473, 474
BspMI	ACCTGC	1 cut(s)	400
BspTNI	GGTCTC	2 cut(s)	260, 362
BssECI	CCNNGG	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	119
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	42, 78, 415
BstDEI	CTNAG	2 cut(s)	276, 480
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	88
BstMAI	GTCTC	3 cut(s)	260, 279, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	476
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	3 cut(s)	290, 464, 474
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	3 cut(s)	42, 78, 415
Cfr13I	GGNCC	4 cut(s)	428, 463, 472, 473
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	6 cut(s)	40, 69, 290, 417, 464, 474
CviKI_1	RGCY	6 cut(s)	40, 69, 290, 417, 464, 474
DdeI	CTNAG	2 cut(s)	276, 480
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	476
Eco31I	GGTCTC	2 cut(s)	260, 362
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	269
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	2 cut(s)	428, 472
EcoT38I	GRGCYC	1 cut(s)	476
FaeI	CATG	1 cut(s)	164
FaiI	YATR	4 cut(s)	162, 204, 263, 329
FatI	CATG	1 cut(s)	160
FauI	CCCGC	1 cut(s)	439
Fnu4HI	GCNGC	2 cut(s)	89, 210
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	2 cut(s)	89, 210
GluI	GCNGC	2 cut(s)	89, 210
GsaI	CCCAGC	1 cut(s)	318
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	3 cut(s)	290, 464, 474
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	1 cut(s)	164
HinfI	GANTC	2 cut(s)	19, 83
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	334, 436
Hpy188I	TCNGA	5 cut(s)	226, 249, 279, 367, 457
Hpy188III	TCNNGA	2 cut(s)	149, 169
HpyCH4V	TGCA	5 cut(s)	44, 53, 76, 160, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	276, 480
Hsp92II	CATG	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	66
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	3 cut(s)	40, 139, 243
MaeIII	GTNAC	1 cut(s)	340
MboII	GAAGA	4 cut(s)	125, 136, 262, 312
MfeI	CAATTG	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	476
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	7 cut(s)	45, 96, 174, 240, 292, 406, 439
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	8 cut(s)	33, 36, 57, 120, 145, 184, 345, 451
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	1 cut(s)	105
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	384
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	4 cut(s)	68, 430, 473, 474
NmuCI	GTSAC	1 cut(s)	340
PaqCI	CACCTGC	1 cut(s)	400
PctI	GAATGC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	83
PflFI	GACNNNGTC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	90, 211
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PpuMI	RGGWCCY	1 cut(s)	428
Psp5II	RGGWCCY	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	314
PspN4I	GGNNCC	4 cut(s)	68, 430, 473, 474
PspOMI	GGGCCC	1 cut(s)	472
PspPI	GGNCC	4 cut(s)	428, 463, 472, 473
PspPPI	RGGWCCY	1 cut(s)	428
PsyI	GACNNNGTC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	2 cut(s)	89, 210
Sau96I	GGNCC	4 cut(s)	428, 463, 472, 473
SchI	GAGTC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	476
SetI	ASST	5 cut(s)	188, 337, 394, 462, 481
SfaNI	GCATC	3 cut(s)	40, 139, 243
SinI	GGWCC	1 cut(s)	428
SmlI	CTYRAG	3 cut(s)	27, 167, 336
SmoI	CTYRAG	3 cut(s)	27, 167, 336
Sse9I	AATT	7 cut(s)	45, 96, 174, 240, 292, 406, 439
SsiI	CCGC	2 cut(s)	88, 432
TasI	AATT	7 cut(s)	45, 96, 174, 240, 292, 406, 439
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	1 cut(s)	250
Tth111I	GACNNNGTC	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	428
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	3 cut(s)	240, 406, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.