Rroxscaffold_1G00005840

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000315
Physical Location & Seq
Reverse (-)
7867090 .. 7872256
5167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005840.1

Sequence Viewer

Length: 2523 bp
ATGGATAACAACGGTGGGAGTCCTCCTAATGGTGGAGAGCCTGCAATGGATGCAGGAGATTGGAGGACCAAACTGCAGGCGGATTCGCGGCAAAGAATTGTCAATAAGATAATGGATACATTGAAGAGGCATCTTCCTTTCTCCGGTCAAGAGGGATTGCATGAACTCAAGAAAATTGCTGTTAGGTTTGAGGAAAAGATTTATACTGCTGCCACAAGTCAGTCAGATTATCTACGGAAAATTTCTCTGAAGATGCTCACTATGGAGAGCAAGTCTCAGACCAAAATGGCCGATTCTTTACAATCCAACTCTGCTGGGTCTTTTGGTATGCAACCTCAAGTCACCAATCAAGGACAACTCTTATCAGAGAACATTCAAAGTAACATTCCACCTGCTGGAGTTCAAAATTCTGCTGGCTTATCATCTGCACTACCCCCTACCTCTGGGCTCAGCTTATCATCTGTACTAGCTCCTACCCCGGCACTAAATACGTCTGCCTTATTATCTGCGCTACCCCCTGCCCCTGGTAGAAATATGCCTGCCAGCTTATCATCTGTGTTACCTTCTCCACAGGATGTGAACATTTCTAGTTCATCATTTGAACCATTTCCTATCTGCGGTCTAGTTCCCTCGAAGAAGTACGCAGTCCAGTCAGATTGGAAGGCTCATAGCAAGATTTGCGGGGCTAGTGAGTATAGATGTGACTGTGGCACACTCTTTTCCAGGAATGATAGCTTCATAACTCATAGAGCTTTCTGTGATGCATTGGCGGCTGAAGAAAGTGCAAGGTTTGGTTCAACTTCAACAGCCACCAACATTAATATTCCGAGCTTCATGGCGGACTCATCTTCCGCTTTACCTCCTGCCTTCAGTCTAGACTTATTGACTAATTTTCATAGGCAAATGCAAGGACAGCAACAGGTAGTTCCTCAACAGCAACAGCAGCAATCAGAGTATTCACAGCAGCGGATTTCTCAGCAACAGATACAACAAGAACTTATTCGAAATATCCAACAGCAACAAGAGCAGCAGCAGATGCTATTACAAAAAACACCATTGTCATCTTCTCAGCAATCTCATGTACAATCAGCATCTTCTGCAGTGGAATCTTTTCTCTGTAGGCTTCAGCAGAATCAACAATTAGCTATTTCCCAGTTGACAAAACCCATGCTTCAGCAAACAGCAATGCCACAACAGCAAATATTGCCGCCACAGCATCAACAGCAACAGTTAACAGCATCTCTGGATTCCACGGCCCAGATTCAAGATAAAAATGGAGCTGATTGGCAAGAGGAGGTCTATCAAAAGATAAAAGTGATGAAGGAGACATACCTAACCACACTAAGAGAGATATACCAGAAAAATGCTACTAAACTTCAGCAGCTCGAATCTTTGCCACAACAGCCTAAGTCGTATCAGCTTGAGAAGCTGAAAATGCTTAAGACCATGCTGGAGCACCTCATAACAGTGTTACAGGTTTCCAAAAGTAACATTTCACCTGTTTTGAAGTGGAAGTTGGGTTTATATGAGAAGCAGATAATAGCTTTCATTAATACAAATAGACCCAAGAAGCTTGATTCTTCTCTGCAACAAGGGCACCTCTCTTCACCTCATTTGCACTCCATAGAGTACTCCCAGTCCCAAATTACTCAAGTGCAATCTCATGAAAATCGTATGAGTCCCCAACTGCATTCGATGAACTTACAAGGATCTGTGGCAACAATGCAGCAGAACAACGTGACAGGCTTGCAGCAAAACTATGTGTCTTCTTTGTCAGGGGTTTCAACTGCACAGCAGAACTCGATGAATCCATTGCAATCAAGTTCCAACACAGATCCAGGACAAGGAAACCCACTGTACTCATCACAGCAGGTCCCTGTTGGTTCTATCCAAGAAATCTGTGTCAGTGGTCCCCAACAAGCTAACAAGAATGCCTTGTCATCACAGAGCGGGATTAACATGCTGCAAGCAAACAATAATCCCCTTCAGTCAAATTCTGATTTTCTTCATAACCGATATCTGCAACAGGGACAGCAATTGAAACAGATTATACTCGAAAAACTGAATGAACAGCGACAGCCGCAGGAGCAGTTGATGCAGAAGCAGCAGCAGCAGCAAATATTTCAACAACAACAGCAGCTGCTGCCTGGACAGTTGGAGCCCCAGCTTCACCAAATCAGTGTTGTTAATGACATGAACATGAATCCCTTGTCATCATCACAGAGTGGGAGTGATATGCTGCAGGGAAGCATTGATTCCCTCAAGTCAAATTCTGGTATGGTTGATAACCAGTGTCAGAAGCAAGAAACTTTCTCTGTGAACCTCAAGCAACTGTATCAACAACTACAGATGCAGCAGCAATGGATGCAGAAACCGCAGATGCTTCAAGAAAAGCAACAGCAGCAGATACAGCAACTACAGCAACAAGCAAAGCAGCGGCTGCATCTTATTTATTTCATCTATCTCATCTTTCTCATTATTCTATACATTGCTGCTGTTTTCGGGAAAGGTTCTTGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

840

Amino Acids

93.89

Weight (kDa)

8.82

Isoelectric Point (pI)

70.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 19 - 97 2e-34 KIX domain
C2CH-3rd_BIRD-IDD PF22995 211 - 228 1.8e-09 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 231 - 269 2.7e-20 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 400
Acc36I ACCTGC 2 cut(s) 400, 1861
AccB1I GGYRCC 1 cut(s) 1596
AccB7I CCANNNNNTGG 1 cut(s) 395
AccBSI CCGCTC 1 cut(s) 1950
AccII CGCG 1 cut(s) 88
AclWI GGATC 2 cut(s) 1717, 1829
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 4 cut(s) 240, 406, 1993, 2269
AcuI CTGAAG 7 cut(s) 269, 795, 853, 1109, 1157, 1361, 1970
AdeI CACNNNGTG 1 cut(s) 2225
AfaI GTAC 5 cut(s) 465, 641, 1083, 1631, 1859
AfiI CCNNNNNNNGG 8 cut(s) 29, 32, 143, 395, 443, 524, 617, 1844
AflII CTTAAG 1 cut(s) 1439
AjnI CCWGG 4 cut(s) 523, 722, 1837, 2146
AjuI GAANNNNNNNTTGG 2 cut(s) 1499, 1531
Alw21I GWGCWC 1 cut(s) 1458
Alw26I GTCTC 2 cut(s) 279, 1319
AlwI GGATC 2 cut(s) 1717, 1829
AlwNI CAGNNNCTG 3 cut(s) 2140, 2143, 2440
AoxI GGCC 2 cut(s) 288, 1254
ApoI RAATTY 4 cut(s) 240, 406, 1993, 2269
AseI ATTAAT 2 cut(s) 819, 1551
Asp700I GAANNNNTTC 3 cut(s) 606, 999, 1110
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 4 cut(s) 66, 1255, 1873, 1910
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 4 cut(s) 334, 1488, 1599, 2162
AsuII TTCGAA 1 cut(s) 1003
AvaII GGWCC 3 cut(s) 66, 1873, 1910
BaeGI GKGCMC 1 cut(s) 1599
BanI GGYRCC 1 cut(s) 1596
BanII GRGCYC 2 cut(s) 450, 2163
BarI GAAGNNNNNNTAC 2 cut(s) 1313, 1345
BbsI GAAGAC 1 cut(s) 1758
Bbv12I GWGCWC 1 cut(s) 1458
BceAI ACGGC 1 cut(s) 1269
BciT130I CCWGG 4 cut(s) 525, 724, 1839, 2148
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 2 cut(s) 279, 1319
BfaI CTAG 5 cut(s) 467, 588, 623, 687, 875
BfmI CTRYAG 6 cut(s) 74, 1098, 1117, 2240, 2345, 2417
BfrI CTTAAG 1 cut(s) 1439
BfuAI ACCTGC 2 cut(s) 400, 1861
BfuI GTATCC 1 cut(s) 109
BlpI GCTNAGC 1 cut(s) 449
BmcAI AGTACT 1 cut(s) 1631
Bme1390I CCNGG 5 cut(s) 479, 525, 724, 1839, 2148
Bme18I GGWCC 3 cut(s) 66, 1873, 1910
BmgT120I GGNCC 4 cut(s) 66, 1255, 1873, 1910
BmiI GGNNCC 4 cut(s) 1598, 1875, 1912, 2160
BmrFI CCNGG 5 cut(s) 479, 525, 724, 1839, 2148
BmrI ACTGGG 2 cut(s) 1147, 1630
BmuI ACTGGG 2 cut(s) 1147, 1630
BpiI GAAGAC 1 cut(s) 1758
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BpmI CTGGAG 2 cut(s) 417, 1472
Bpu1102I GCTNAGC 1 cut(s) 449
Bpu14I TTCGAA 1 cut(s) 1003
BpuEI CTTGAG 6 cut(s) 152, 321, 1442, 1635, 2246, 2309
BpuMI CCSGG 1 cut(s) 479
BsaJI CCNNGG 3 cut(s) 477, 523, 1251
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 8 cut(s) 29, 32, 143, 395, 443, 524, 617, 1844
Bse1I ACTGG 4 cut(s) 649, 1153, 1636, 2290
Bse3DI GCAATG 5 cut(s) 51, 1191, 1811, 2366, 2487
BseBI CCWGG 4 cut(s) 525, 724, 1839, 2148
BseDI CCNNGG 3 cut(s) 477, 523, 1251
BseGI GGATG 3 cut(s) 55, 580, 2370
BseLI CCNNNNNNNGG 8 cut(s) 29, 32, 143, 395, 443, 524, 617, 1844
BseMI GCAATG 5 cut(s) 51, 1191, 1811, 2366, 2487
BseMII CTCAG 4 cut(s) 290, 463, 989, 1082
BseNI ACTGG 4 cut(s) 649, 1153, 1636, 2290
BseRI GAGGAG 1 cut(s) 1307
BseSI GKGCMC 1 cut(s) 1599
BseYI CCCAGC 2 cut(s) 314, 2163
BsgI GTGCAG 2 cut(s) 411, 1773
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 2 cut(s) 290, 1256
BshNI GGYRCC 1 cut(s) 1596
BsiHKAI GWGCWC 1 cut(s) 1458
BsiSI CCGG 2 cut(s) 144, 479
BslFI GGGAC 5 cut(s) 1624, 1665, 1859, 1896, 2043
BslI CCNNNNNNNGG 8 cut(s) 29, 32, 143, 395, 443, 524, 617, 1844
BsmAI GTCTC 2 cut(s) 279, 1319
BsmFI GGGAC 5 cut(s) 1624, 1665, 1859, 1896, 2043
BsmI GAATGC 2 cut(s) 1690, 1936
BsnI GGCC 2 cut(s) 290, 1256
Bsp119I TTCGAA 1 cut(s) 1003
Bsp1286I GDGCHC 4 cut(s) 450, 1458, 1599, 2163
Bsp1407I TGTACA 1 cut(s) 1081
Bsp143I GATC 2 cut(s) 1709, 1834
Bsp1720I GCTNAGC 1 cut(s) 449
BspANI GGCC 2 cut(s) 290, 1256
BspCNI CTCAG 4 cut(s) 289, 462, 988, 1081
BspFNI CGCG 1 cut(s) 88
BspHI TCATGA 1 cut(s) 1663
BspLI GGNNCC 4 cut(s) 1598, 1875, 1912, 2160
BspMAI CTGCAG 3 cut(s) 78, 1102, 2244
BspMI ACCTGC 2 cut(s) 400, 1861
BspPI GGATC 2 cut(s) 1717, 1829
BspT104I TTCGAA 1 cut(s) 1003
BspT107I GGYRCC 1 cut(s) 1596
BspTI CTTAAG 1 cut(s) 1439
BsrBI CCGCTC 1 cut(s) 1950
BsrDI GCAATG 5 cut(s) 51, 1191, 1811, 2366, 2487
BsrGI TGTACA 1 cut(s) 1081
BsrI ACTGG 4 cut(s) 649, 1153, 1636, 2290
BssECI CCNNGG 3 cut(s) 477, 523, 1251
BssMI GATC 2 cut(s) 1709, 1834
Bst2UI CCWGG 4 cut(s) 525, 724, 1839, 2148
Bst4CI ACNGT 7 cut(s) 14, 707, 1230, 1468, 1857, 2154, 2334
Bst6I CTCTTC 2 cut(s) 119, 1609
BstAFI CTTAAG 1 cut(s) 1439
BstAPI GCANNNNNTGC 9 cut(s) 50, 678, 1036, 1097, 1204, 2095, 2143, 2365, 2440
BstAUI TGTACA 1 cut(s) 1081
BstBI TTCGAA 1 cut(s) 1003
BstC8I GCNNGC 7 cut(s) 42, 78, 415, 540, 544, 1748, 1968
BstDEI CTNAG 6 cut(s) 276, 449, 975, 1068, 1343, 1407
BstDSI CCRYGG 1 cut(s) 1251
BstF5I GGATG 3 cut(s) 55, 580, 2370
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 2 cut(s) 1712, 1837
BstMAI GTCTC 2 cut(s) 279, 1319
BstMBI GATC 2 cut(s) 1709, 1834
BstNI CCWGG 4 cut(s) 525, 724, 1839, 2148
BstNSI RCATGY 1 cut(s) 1963
BstSCI CCNGG 5 cut(s) 477, 523, 722, 1837, 2146
BstSFI CTRYAG 6 cut(s) 74, 1098, 1117, 2240, 2345, 2417
BstSLI GKGCMC 1 cut(s) 1599
BstUI CGCG 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 1758
BstX2I RGATCY 2 cut(s) 1709, 1834
BstYI RGATCY 2 cut(s) 1709, 1834
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 290, 1256
BtgI CCRYGG 1 cut(s) 1251
BtsCI GGATG 3 cut(s) 55, 580, 2370
BtsI GCAGTG 1 cut(s) 1107
BtsIMutI CAGTG 6 cut(s) 1107, 1473, 1853, 1912, 2185, 2297
BveI ACCTGC 2 cut(s) 400, 1861
Cac8I GCNNGC 7 cut(s) 42, 78, 415, 540, 544, 1748, 1968
CaiI CAGNNNCTG 3 cut(s) 2140, 2143, 2440
CciI TCATGA 1 cut(s) 1663
CfoI GCGC 1 cut(s) 511
Cfr13I GGNCC 4 cut(s) 66, 1255, 1873, 1910
Csp6I GTAC 5 cut(s) 464, 640, 1082, 1630, 1858
CviAII CATG 9 cut(s) 161, 835, 1079, 1168, 1447, 1664, 1960, 2194, 2200
CviQI GTAC 5 cut(s) 464, 640, 1082, 1630, 1858
DdeI CTNAG 6 cut(s) 276, 449, 975, 1068, 1343, 1407
DpnI GATC 2 cut(s) 1711, 1836
DpnII GATC 2 cut(s) 1709, 1834
DraIII CACNNNGTG 1 cut(s) 2225
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 119, 1609
EarI CTCTTC 2 cut(s) 119, 1609
EciI GGCGGA 2 cut(s) 95, 854
Eco24I GRGCYC 2 cut(s) 450, 2163
Eco32I GATATC 1 cut(s) 2018
Eco47I GGWCC 3 cut(s) 66, 1873, 1910
Eco57I CTGAAG 7 cut(s) 269, 795, 853, 1109, 1157, 1361, 1970
EcoO109I RGGNCCY 1 cut(s) 1873
EcoRII CCWGG 4 cut(s) 523, 722, 1837, 2146
EcoRV GATATC 1 cut(s) 2018
EcoT22I ATGCAT 1 cut(s) 766
EcoT38I GRGCYC 2 cut(s) 450, 2163
FaeI CATG 9 cut(s) 164, 838, 1082, 1171, 1450, 1667, 1963, 2197, 2203
FalI AAGNNNNNCTT 2 cut(s) 1919, 1951
FaqI GGGAC 5 cut(s) 1624, 1665, 1859, 1896, 2043
FatI CATG 9 cut(s) 160, 834, 1078, 1167, 1446, 1663, 1959, 2193, 2199
FauI CCCGC 2 cut(s) 674, 1943
FokI GGATG 3 cut(s) 62, 587, 2377
FriOI GRGCYC 2 cut(s) 450, 2163
FspBI CTAG 5 cut(s) 467, 588, 623, 687, 875
GlaI GCGC 1 cut(s) 510
GsaI CCCAGC 2 cut(s) 318, 2167
GsuI CTGGAG 2 cut(s) 417, 1472
HaeIII GGCC 2 cut(s) 290, 1256
HapII CCGG 2 cut(s) 144, 479
HhaI GCGC 1 cut(s) 511
Hin1II CATG 9 cut(s) 164, 838, 1082, 1171, 1450, 1667, 1963, 2197, 2203
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HincII GTYRAC 2 cut(s) 1158, 1233
HindII GTYRAC 2 cut(s) 1158, 1233
HindIII AAGCTT 1 cut(s) 1571
HpaI GTTAAC 1 cut(s) 1233
HpaII CCGG 2 cut(s) 144, 479
HphI GGTGA 4 cut(s) 334, 1488, 1599, 2162
Hpy166II GTNNAC 4 cut(s) 580, 1158, 1233, 2320
Hpy188I TCNGA 9 cut(s) 226, 249, 279, 367, 655, 828, 952, 1999, 2298
Hpy188III TCNNGA 8 cut(s) 149, 169, 875, 1244, 1265, 1664, 2387, 2503
Hpy8I GTNNAC 4 cut(s) 580, 1158, 1233, 2320
HpyAV CCTTC 5 cut(s) 573, 655, 877, 1315, 1994
HpyCH4III ACNGT 7 cut(s) 14, 707, 1230, 1468, 1857, 2154, 2334
HpyCH4IV ACGT 2 cut(s) 491, 1737
HpyF3I CTNAG 6 cut(s) 276, 449, 975, 1068, 1343, 1407
HpySE526I ACGT 2 cut(s) 491, 1737
Hsp92II CATG 9 cut(s) 164, 838, 1082, 1171, 1450, 1667, 1963, 2197, 2203
HspAI GCGC 1 cut(s) 509
KspAI GTTAAC 1 cut(s) 1233
Kzo9I GATC 2 cut(s) 1709, 1834
LmnI GCTCC 5 cut(s) 475, 1277, 1453, 2086, 2158
MaeI CTAG 5 cut(s) 467, 588, 623, 687, 875
MaeII ACGT 2 cut(s) 491, 1737
MaeIII GTNAC 7 cut(s) 340, 380, 558, 701, 1470, 1487, 1738
MalI GATC 2 cut(s) 1711, 1836
MbiI CCGCTC 1 cut(s) 1950
MboI GATC 2 cut(s) 1709, 1834
MfeI CAATTG 1 cut(s) 2036
MflI RGATCY 2 cut(s) 1709, 1834
MhlI GDGCHC 4 cut(s) 450, 1458, 1599, 2163
MlyI GAGTC 3 cut(s) 28, 836, 1687
MmeI TCCRAC 4 cut(s) 330, 1036, 1851, 2136
Mph1103I ATGCAT 1 cut(s) 766
MroXI GAANNNNTTC 3 cut(s) 606, 999, 1110
MseI TTAA 7 cut(s) 819, 1232, 1440, 1551, 1956, 2187, 2521
MslI CAYNNNNRTG 2 cut(s) 1466, 2198
MspA1I CMGCKG 3 cut(s) 967, 2140, 2437
MspCI CTTAAG 1 cut(s) 1439
MspI CCGG 2 cut(s) 144, 479
MspR9I CCNGG 5 cut(s) 479, 525, 724, 1839, 2148
MunI CAATTG 1 cut(s) 2036
Mva1269I GAATGC 2 cut(s) 1690, 1936
MvaI CCWGG 4 cut(s) 525, 724, 1839, 2148
MvnI CGCG 1 cut(s) 88
NciI CCSGG 1 cut(s) 479
NdeII GATC 2 cut(s) 1709, 1834
NlaIII CATG 9 cut(s) 164, 838, 1082, 1171, 1450, 1667, 1963, 2197, 2203
NlaIV GGNNCC 4 cut(s) 1598, 1875, 1912, 2160
NmuCI GTSAC 3 cut(s) 340, 701, 1738
NsiI ATGCAT 1 cut(s) 766
NspI RCATGY 1 cut(s) 1963
NspV TTCGAA 1 cut(s) 1003
PagI TCATGA 1 cut(s) 1663
PaqCI CACCTGC 1 cut(s) 400
PctI GAATGC 2 cut(s) 1690, 1936
PdmI GAANNNNTTC 3 cut(s) 606, 999, 1110
PflMI CCANNNNNTGG 1 cut(s) 395
PfoI TCCNGGA 2 cut(s) 722, 1837
PleI GAGTC 3 cut(s) 27, 836, 1686
PpsI GAGTC 3 cut(s) 27, 836, 1686
PpuMI RGGWCCY 1 cut(s) 1873
PshBI ATTAAT 2 cut(s) 819, 1551
Psp5II RGGWCCY 1 cut(s) 1873
Psp6I CCWGG 4 cut(s) 523, 722, 1837, 2146
PspFI CCCAGC 2 cut(s) 314, 2163
PspGI CCWGG 4 cut(s) 523, 722, 1837, 2146
PspN4I GGNNCC 4 cut(s) 1598, 1875, 1912, 2160
PspPI GGNCC 4 cut(s) 66, 1255, 1873, 1910
PspPPI RGGWCCY 1 cut(s) 1873
PstI CTGCAG 3 cut(s) 78, 1102, 2244
PstNI CAGNNNCTG 3 cut(s) 2140, 2143, 2440
PsuI RGATCY 2 cut(s) 1709, 1834
PvuII CAGCTG 1 cut(s) 2140
RsaI GTAC 5 cut(s) 465, 641, 1083, 1631, 1859
RsaNI GTAC 5 cut(s) 464, 640, 1082, 1630, 1858
RseI CAYNNNNRTG 2 cut(s) 1466, 2198
SaqAI TTAA 7 cut(s) 819, 1232, 1440, 1551, 1956, 2187, 2521
Sau3AI GATC 2 cut(s) 1709, 1834
Sau96I GGNCC 4 cut(s) 66, 1255, 1873, 1910
ScaI AGTACT 1 cut(s) 1631
SchI GAGTC 3 cut(s) 28, 836, 1687
ScrFI CCNGG 5 cut(s) 479, 525, 724, 1839, 2148
SduI GDGCHC 4 cut(s) 450, 1458, 1599, 2163
SfcI CTRYAG 6 cut(s) 74, 1098, 1117, 2240, 2345, 2417
SfuI TTCGAA 1 cut(s) 1003
SinI GGWCC 3 cut(s) 66, 1873, 1910
SmiMI CAYNNNNRTG 2 cut(s) 1466, 2198
SmlI CTYRAG 7 cut(s) 167, 336, 1421, 1439, 1650, 2261, 2324
SmoI CTYRAG 7 cut(s) 167, 336, 1421, 1439, 1650, 2261, 2324
SspI AATATT 3 cut(s) 823, 1203, 2121
SspMI CTAG 5 cut(s) 467, 588, 623, 687, 875
StyD4I CCNGG 5 cut(s) 477, 523, 722, 1837, 2146
TaaI ACNGT 7 cut(s) 14, 707, 1230, 1468, 1857, 2154, 2334
TaiI ACGT 2 cut(s) 494, 1740
TaqI TCGA 6 cut(s) 632, 1003, 1386, 1694, 1802, 2055
TatI WGTACW 4 cut(s) 463, 1081, 1629, 1857
TauI GCSGC 5 cut(s) 91, 773, 1210, 2083, 2440
Tru1I TTAA 7 cut(s) 819, 1232, 1440, 1551, 1956, 2187, 2521
Tru9I TTAA 7 cut(s) 819, 1232, 1440, 1551, 1956, 2187, 2521
TscAI CASTG 6 cut(s) 1107, 1473, 1860, 1912, 2185, 2297
TseFI GTSAC 3 cut(s) 340, 701, 1738
Tsp45I GTSAC 3 cut(s) 340, 701, 1738
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 6 cut(s) 1107, 1473, 1860, 1912, 2185, 2297
Van91I CCANNNNNTGG 1 cut(s) 395
Vha464I CTTAAG 1 cut(s) 1439
VpaK11BI GGWCC 3 cut(s) 66, 1873, 1910
VspI ATTAAT 2 cut(s) 819, 1551
XapI RAATTY 4 cut(s) 240, 406, 1993, 2269
XbaI TCTAGA 1 cut(s) 874
XceI RCATGY 1 cut(s) 1963
XmnI GAANNNNTTC 3 cut(s) 606, 999, 1110
XspI CTAG 5 cut(s) 467, 588, 623, 687, 875
ZrmI AGTACT 1 cut(s) 1631
Zsp2I ATGCAT 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.