Rmu_sc0031378.1_g000001

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031378.1
OG0000315
Physical Location & Seq
Forward (+)
621 .. 1224
604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031378.1_g000001.1.cds

Sequence Viewer

Length: 411 bp
atggtgttgggttggttaggtttaaaggataacaacaatggcattcctcctcaagatggacggccctcaatggaagcaggagattggaggagcagaatgcccacggatatgcggcaaagacttatcaacaagataatgtctacattgaaggcgcatcgccccatttctggtcaagagggattagatgaactcgagaaaaatgctgtaagtttggaggaaaagatttttgctgctgccactagccagttggactatctctggaaagtttctcaggagatgctcacagtggtgaccaagccacagaatacaacatccaatcctctagaatccaatggcaagggacctctcgattcaggtaaaaacacctctgtctcagttcgcgtttatatgtttattttgcataattactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

136

Amino Acids

15.23

Weight (kDa)

7.99

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 140
AccII CGCG 1 cut(s) 381
AciI CCGC 1 cut(s) 112
AfiI CCNNNNNNNGG 2 cut(s) 56, 167
AgsI TTSAA 1 cut(s) 148
AleI CACNNNNGTG 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 2 cut(s) 230, 233
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 63, 341
AsuHPI GGTGA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 217, 220
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 2 cut(s) 240, 323
BisI GCNGC 3 cut(s) 113, 231, 234
BlsI GCNGC 3 cut(s) 114, 232, 235
Bme18I GGWCC 1 cut(s) 341
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 63, 341
BmiI GGNNCC 1 cut(s) 342
BmsI GCATC 2 cut(s) 163, 267
BpuEI CTTGAG 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 167
Bse1I ACTGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 311
BseLI CCNNNNNNNGG 2 cut(s) 56, 167
BseMII CTCAG 2 cut(s) 284, 387
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 2 cut(s) 39, 103
BseXI GCAGC 2 cut(s) 217, 220
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 2 cut(s) 56, 167
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 354
BsmI GAATGC 2 cut(s) 42, 102
BsnI GGCC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 191
BspACI CCGC 1 cut(s) 112
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 283, 386
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 342
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 270, 373
BstDSI CCRYGG 1 cut(s) 102
BstEII GGTNACC 1 cut(s) 289
BstF5I GGATG 1 cut(s) 311
BstFNI CGCG 1 cut(s) 381
BstHHI GCGC 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 376
BstPI GGTNACC 1 cut(s) 289
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 217, 220
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 140
BtsCI GGATG 1 cut(s) 311
BtsIMutI CAGTG 1 cut(s) 291
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 63, 341
CviJI RGCY 3 cut(s) 64, 243, 298
CviKI_1 RGCY 3 cut(s) 64, 243, 298
DdeI CTNAG 2 cut(s) 270, 373
DraI TTTAAA 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 341
EcoO65I GGTNACC 1 cut(s) 289
FaiI YATR 4 cut(s) 110, 387, 389, 402
FaqI GGGAC 1 cut(s) 354
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 3 cut(s) 113, 231, 234
FokI GGATG 1 cut(s) 298
Fsp4HI GCNGC 3 cut(s) 113, 231, 234
FspBI CTAG 2 cut(s) 240, 323
GlaI GCGC 1 cut(s) 153
GluI GCNGC 3 cut(s) 113, 231, 234
HaeIII GGCC 1 cut(s) 64
HhaI GCGC 1 cut(s) 154
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 2 cut(s) 326, 350
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 141
Hpy188III TCNNGA 7 cut(s) 53, 173, 193, 259, 272, 323, 347
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 400
HpyF3I CTNAG 2 cut(s) 270, 373
HspAI GCGC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 6 cut(s) 63, 153, 244, 257, 257, 339
Lsp1109I GCAGC 2 cut(s) 217, 220
LweI GCATC 2 cut(s) 163, 267
MaeI CTAG 2 cut(s) 240, 323
MaeIII GTNAC 1 cut(s) 289
MluCI AATT 1 cut(s) 403
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 9 cut(s) 57, 60, 76, 81, 169, 208, 330, 354, 376
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 2 cut(s) 107, 287
Mva1269I GAATGC 2 cut(s) 42, 102
MvnI CGCG 1 cut(s) 381
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 191
PctI GAATGC 2 cut(s) 42, 102
PfeI GAWTC 2 cut(s) 326, 350
PkrI GCNGC 3 cut(s) 114, 232, 235
PpuMI RGGWCCY 1 cut(s) 341
Psp5II RGGWCCY 1 cut(s) 341
PspEI GGTNACC 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 2 cut(s) 63, 341
PspPPI RGGWCCY 1 cut(s) 341
RseI CAYNNNNRTG 2 cut(s) 107, 287
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 3 cut(s) 113, 231, 234
Sau96I GGNCC 2 cut(s) 63, 341
SetI ASST 4 cut(s) 22, 346, 358, 368
SfaNI GCATC 2 cut(s) 163, 267
Sfr274I CTCGAG 1 cut(s) 191
SinI GGWCC 1 cut(s) 341
SlaI CTCGAG 1 cut(s) 191
SmiMI CAYNNNNRTG 2 cut(s) 107, 287
SmlI CTYRAG 2 cut(s) 51, 191
SmoI CTYRAG 2 cut(s) 51, 191
Sse9I AATT 1 cut(s) 403
SsiI CCGC 1 cut(s) 112
SspMI CTAG 2 cut(s) 240, 323
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 2 cut(s) 192, 348
TasI AATT 1 cut(s) 403
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 2 cut(s) 326, 350
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 230, 233
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 201
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 341
XbaI TCTAGA 1 cut(s) 322
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 140
XspI CTAG 2 cut(s) 240, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.