MD17G1101700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000161
Physical Location & Seq
Reverse (-)
8637811 .. 8639106
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1101700.v1.1.491

Sequence Viewer

Length: 171 bp
ATGAAGTCCCTTGATCCTGAAGATCATGACATGAAGTTCCTAGATGAGTACCGTAAGTTTGAAGTGCCGCAGTGCCTTAACTTAATTGTAATAAAAGCCATAAGAGTCTTAGTTTACAGACTATTAAATAAGGACCAGAAGTTCCTTATGTCCATACTCAAAATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.77

Weight (kDa)

8.85

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 68
AclWI GGATC 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 50
AgsI TTSAA 1 cut(s) 62
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AlwI GGATC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 133
AvaII GGWCC 1 cut(s) 133
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
Bsp143I GATC 2 cut(s) 13, 22
BspACI CCGC 1 cut(s) 68
BspHI TCATGA 1 cut(s) 25
BspPI GGATC 1 cut(s) 8
BssMI GATC 2 cut(s) 13, 22
Bst4CI ACNGT 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 109
BstKTI GATC 2 cut(s) 16, 25
BstMBI GATC 2 cut(s) 13, 22
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
CciI TCATGA 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 26, 31
CviJI RGCY 1 cut(s) 98
CviKI_1 RGCY 1 cut(s) 98
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 109
DpnI GATC 2 cut(s) 15, 24
DpnII GATC 2 cut(s) 13, 22
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 39
FaeI CATG 2 cut(s) 29, 34
FaiI YATR 5 cut(s) 27, 32, 101, 149, 155
FatI CATG 2 cut(s) 25, 30
Fnu4HI GCNGC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 29, 34
HinfI GANTC 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 115
Hpy188III TCNNGA 2 cut(s) 17, 26
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 2 cut(s) 29, 34
Kzo9I GATC 2 cut(s) 13, 22
LpnPI CCDG 2 cut(s) 30, 149
MaeI CTAG 1 cut(s) 41
MalI GATC 2 cut(s) 15, 24
MboI GATC 2 cut(s) 13, 22
MboII GAAGA 1 cut(s) 32
MluCI AATT 1 cut(s) 84
MlyI GAGTC 1 cut(s) 114
MseI TTAA 3 cut(s) 78, 83, 125
NdeII GATC 2 cut(s) 13, 22
NlaIII CATG 2 cut(s) 29, 34
PagI TCATGA 1 cut(s) 25
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 133
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SaqAI TTAA 3 cut(s) 78, 83, 125
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 2 cut(s) 13, 22
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 114
SgeI CNNG 6 cut(s) 23, 29, 38, 43, 53, 148
SinI GGWCC 1 cut(s) 133
Sse9I AATT 1 cut(s) 84
SsiI CCGC 1 cut(s) 68
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 53
TasI AATT 1 cut(s) 84
TauI GCSGC 1 cut(s) 70
Tru1I TTAA 3 cut(s) 78, 83, 125
Tru9I TTAA 3 cut(s) 78, 83, 125
TscAI CASTG 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 17, 47
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.