Rmu_sc0005584.1_g000017

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005584.1
Physical Location & Seq
Forward (+)
49358 .. 50591
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005584.1_g000017.1.cds

Sequence Viewer

Length: 708 bp
atgcacgtagagaacggaaatgagttcctttgcaaaacctctactgattgcgaacaaaggcgcatcttagagaagtttatatgtctttctggtggactttatgtcactattcgagctattaaatccaataaagttatgagagaagatctcttggatttagacaagtattggctttgtcatgacaggataggtcaacctggtcatgatatgataatccgtctactaaagacttcacatggacatcttttctatcgagcgaaacaaagcatgaatcaaaagttgatatggatagcgtccatcatggtgatggcgccccagtcaattgggtttgacattgctagagagtttacatcgaagacttttgatggttattgcaatgggactgatgttggacatcatattcccatgtacacacccaaatggtctagcggaaatgactacgatggtattccggacattggtaatgcacaccaatctccttatatccgcttgggactaatgggcaactacattggatttgagactccaacaatcgtccgccacttaatgcccttgctaggtgatctcattaccgctagatttgcgggttgtcactttgatgagacagtcttcccatcgttagggggagataagaacatgaatgttcaacaggaacgacagaaattgccttggtctgtccccactatgtctcatctcgatccctactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

235

Amino Acids

26.81

Weight (kDa)

6.82

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 310
AccI GTMKAC 1 cut(s) 220
AccIII TCCGGA 1 cut(s) 451
AciI CCGC 5 cut(s) 429, 487, 538, 573, 584
AclWI GGATC 1 cut(s) 692
AcyI GRCGYC 1 cut(s) 311
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 3 cut(s) 458, 557, 620
AgsI TTSAA 1 cut(s) 647
AhdI GACNNNNNGTC 1 cut(s) 101
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw26I GTCTC 3 cut(s) 515, 596, 693
AlwI GGATC 1 cut(s) 692
Aor13HI TCCGGA 1 cut(s) 451
AspLEI GCGC 2 cut(s) 63, 313
AsuHPI GGTGA 2 cut(s) 316, 572
BanI GGYRCC 1 cut(s) 310
BbsI GAAGAC 2 cut(s) 362, 601
BccI CCATC 5 cut(s) 301, 305, 359, 437, 622
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 3 cut(s) 515, 596, 693
BfaI CTAG 4 cut(s) 339, 426, 557, 576
BfoI RGCGCY 1 cut(s) 314
BglII AGATCT 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 198
BmeRI GACNNNNNGTC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 2 cut(s) 362, 601
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BsaAI YACGTR 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 668
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 3 cut(s) 458, 557, 620
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 2 cut(s) 333, 382
BseAI TCCGGA 1 cut(s) 451
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 668
BseLI CCNNNNNNNGG 3 cut(s) 458, 557, 620
BseMI GCAATG 2 cut(s) 333, 382
BseNI ACTGG 1 cut(s) 316
BshNI GGYRCC 1 cut(s) 310
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 3 cut(s) 394, 507, 662
BslI CCNNNNNNNGG 3 cut(s) 458, 557, 620
BsmAI GTCTC 3 cut(s) 515, 596, 693
BsmFI GGGAC 3 cut(s) 394, 507, 662
Bsp13I TCCGGA 1 cut(s) 451
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 3 cut(s) 145, 562, 697
BspACI CCGC 5 cut(s) 429, 487, 538, 573, 584
BspEI TCCGGA 1 cut(s) 451
BspHI TCATGA 2 cut(s) 178, 202
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 1 cut(s) 692
BspT107I GGYRCC 1 cut(s) 310
BsrDI GCAATG 2 cut(s) 333, 382
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 668
BssMI GATC 3 cut(s) 145, 562, 697
BssNI GRCGYC 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 668
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 607
BstACI GRCGYC 1 cut(s) 311
BstAUI TGTACA 1 cut(s) 408
BstBAI YACGTR 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 2 cut(s) 63, 313
BstKTI GATC 3 cut(s) 148, 565, 700
BstMAI GTCTC 3 cut(s) 515, 596, 693
BstMBI GATC 3 cut(s) 145, 562, 697
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstV2I GAAGAC 2 cut(s) 362, 601
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 323
BstYI RGATCY 1 cut(s) 145
CciI TCATGA 2 cut(s) 178, 202
CfoI GCGC 2 cut(s) 63, 313
CseI GACGC 1 cut(s) 282
CsiI ACCWGGT 1 cut(s) 196
Csp6I GTAC 1 cut(s) 409
CviAII CATG 7 cut(s) 179, 203, 236, 268, 301, 406, 637
CviJI RGCY 2 cut(s) 116, 172
CviKI_1 RGCY 2 cut(s) 116, 172
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 1 cut(s) 67
DinI GGCGCC 1 cut(s) 312
DpnI GATC 3 cut(s) 147, 564, 699
DpnII GATC 3 cut(s) 145, 562, 697
DriI GACNNNNNGTC 1 cut(s) 101
Eam1105I GACNNNNNGTC 1 cut(s) 101
EciI GGCGGA 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 668
EgeI GGCGCC 1 cut(s) 312
EheI GGCGCC 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 668
FaeI CATG 7 cut(s) 182, 206, 239, 271, 304, 409, 640
FaqI GGGAC 3 cut(s) 394, 507, 662
FatI CATG 7 cut(s) 178, 202, 235, 267, 300, 405, 636
FauI CCCGC 1 cut(s) 577
FblI GTMKAC 1 cut(s) 220
FspBI CTAG 4 cut(s) 339, 426, 557, 576
GlaI GCGC 2 cut(s) 62, 312
HaeII RGCGCY 1 cut(s) 314
HapII CCGG 1 cut(s) 452
HgaI GACGC 1 cut(s) 282
HhaI GCGC 2 cut(s) 63, 313
Hin1I GRCGYC 1 cut(s) 311
Hin1II CATG 7 cut(s) 182, 206, 239, 271, 304, 409, 640
Hin6I GCGC 2 cut(s) 61, 311
HinP1I GCGC 2 cut(s) 61, 311
HincII GTYRAC 1 cut(s) 194
HindII GTYRAC 1 cut(s) 194
HinfI GANTC 2 cut(s) 271, 523
HpaII CCGG 1 cut(s) 452
HphI GGTGA 2 cut(s) 316, 572
Hpy166II GTNNAC 5 cut(s) 95, 194, 221, 348, 411
Hpy188III TCNNGA 4 cut(s) 179, 203, 452, 695
Hpy8I GTNNAC 5 cut(s) 95, 194, 221, 348, 411
HpyCH4III ACNGT 1 cut(s) 607
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 4 cut(s) 4, 33, 375, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 1 cut(s) 311
Hsp92II CATG 7 cut(s) 182, 206, 239, 271, 304, 409, 640
HspAI GCGC 2 cut(s) 61, 311
KasI GGCGCC 1 cut(s) 310
Kpn2I TCCGGA 1 cut(s) 451
Kzo9I GATC 3 cut(s) 145, 562, 697
LpnPI CCDG 7 cut(s) 75, 169, 183, 210, 329, 465, 635
LweI GCATC 1 cut(s) 72
MabI ACCWGGT 1 cut(s) 196
MaeI CTAG 4 cut(s) 339, 426, 557, 576
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 103, 590
MalI GATC 3 cut(s) 147, 564, 699
MboI GATC 3 cut(s) 145, 562, 697
MboII GAAGA 3 cut(s) 155, 367, 601
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 145
MluCI AATT 2 cut(s) 321, 662
Mly113I GGCGCC 1 cut(s) 311
MlyI GAGTC 1 cut(s) 517
MmeI TCCRAC 2 cut(s) 370, 551
MnlI CCTC 1 cut(s) 49
MroI TCCGGA 1 cut(s) 451
MseI TTAA 2 cut(s) 120, 545
MslI CAYNNNNRTG 4 cut(s) 302, 305, 418, 597
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 198
MunI CAATTG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 581
NarI GGCGCC 1 cut(s) 311
NdeII GATC 3 cut(s) 145, 562, 697
NlaIII CATG 7 cut(s) 182, 206, 239, 271, 304, 409, 640
NlaIV GGNNCC 1 cut(s) 312
NmuCI GTSAC 2 cut(s) 103, 590
PagI TCATGA 2 cut(s) 178, 202
PfeI GAWTC 1 cut(s) 271
PleI GAGTC 1 cut(s) 517
PluTI GGCGCC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 517
Ppu21I YACGTR 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 312
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 4 cut(s) 302, 305, 418, 597
SaqAI TTAA 2 cut(s) 120, 545
Sau3AI GATC 3 cut(s) 145, 562, 697
SchI GAGTC 1 cut(s) 517
ScrFI CCNGG 1 cut(s) 198
SetI ASST 6 cut(s) 9, 41, 118, 193, 199, 562
SexAI ACCWGGT 1 cut(s) 196
SfaNI GCATC 1 cut(s) 72
SfoI GGCGCC 1 cut(s) 312
SmiMI CAYNNNNRTG 4 cut(s) 302, 305, 418, 597
Sse9I AATT 2 cut(s) 321, 662
SsiI CCGC 5 cut(s) 429, 487, 538, 573, 584
SspDI GGCGCC 1 cut(s) 310
SspMI CTAG 4 cut(s) 339, 426, 557, 576
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 1 cut(s) 668
TaaI ACNGT 1 cut(s) 607
TaiI ACGT 1 cut(s) 9
TaqI TCGA 4 cut(s) 112, 253, 353, 696
TasI AATT 2 cut(s) 321, 662
TatI WGTACW 1 cut(s) 408
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 120, 545
Tru9I TTAA 2 cut(s) 120, 545
TseFI GTSAC 2 cut(s) 103, 590
Tsp45I GTSAC 2 cut(s) 103, 590
TspDTI ATGAA 2 cut(s) 284, 653
TspGWI ACGGA 2 cut(s) 30, 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 220
XspI CTAG 4 cut(s) 339, 426, 557, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.