Rmu_sc0013305.1_g000008

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013305.1
Physical Location & Seq
Forward (+)
36729 .. 38293
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013305.1_g000008.1.cds

Sequence Viewer

Length: 618 bp
atgattctgatcattgaatcctatactgtcaccaacagtgaaatgtgggacactgactcatacaggctttggcatgaccgcctagggcaccccggtcgtgacatgatgatcgtgacgagatcacatataccagctgcaaatgtgcctgcaaggttagaagtccccaacaaggggcacggtgtcgcatatagaggcactgcaactgcacttagtggaggtgtggttgaggctgtggctccccaaggaagagggggaggccacttggttcgattgacactcacccatggaagaagagggcaagacgctccgatgtttaaaatgattccagagaacaaagaaatcttagagaattatgagagtgcgtatgagttgatagaaaaatctttcatacacattgatgatgtatttgcatacactgttgctcaagaaatcatagagcacgatgatatcgaaccacgctctgttgtagaatgtcaacaaagagcagattggcctaaatggaaagaagcaattcgggcagaattagattctctgataaagaggcaggtatttggtccggtagtgctgacccctgttagcattaaagccaccctcaagtgcaagaggtacaagttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

205

Amino Acids

23.19

Weight (kDa)

6.71

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 535
AccB1I GGYRCC 1 cut(s) 87
AciI CCGC 1 cut(s) 79
AdeI CACNNNGTG 1 cut(s) 212
AfaI GTAC 1 cut(s) 608
AfiI CCNNNNNNNGG 3 cut(s) 169, 170, 171
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw21I GWGCWC 1 cut(s) 441
AoxI GGCC 2 cut(s) 256, 491
ApeKI GCWGC 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 510
AspA2I CCTAGG 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 554
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 2 cut(s) 22, 271
AvaII GGWCC 1 cut(s) 554
AvrII CCTAGG 1 cut(s) 82
BaeGI GKGCMC 2 cut(s) 90, 177
BanI GGYRCC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BclI TGATCA 1 cut(s) 9
BcnI CCSGG 1 cut(s) 93
BfaI CTAG 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 535
BisI GCNGC 1 cut(s) 135
BlnI CCTAGG 1 cut(s) 82
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 554
BmgT120I GGNCC 1 cut(s) 554
BmiI GGNNCC 2 cut(s) 89, 237
BmrFI CCNGG 1 cut(s) 93
BpuEI CTTGAG 2 cut(s) 408, 578
BpuMI CCSGG 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 4 cut(s) 82, 91, 241, 283
BsaWI WCCGGW 1 cut(s) 556
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 170, 171
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 4 cut(s) 82, 91, 241, 283
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 169, 170, 171
BseSI GKGCMC 2 cut(s) 90, 177
BseXI GCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 258, 493
BshNI GGYRCC 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 2 cut(s) 93, 557
BslFI GGGAC 2 cut(s) 62, 146
BslI CCNNNNNNNGG 3 cut(s) 169, 170, 171
BsmFI GGGAC 2 cut(s) 62, 146
BsnI GGCC 2 cut(s) 258, 493
Bsp1286I GDGCHC 3 cut(s) 90, 177, 441
Bsp143I GATC 3 cut(s) 9, 108, 119
Bsp19I CCATGG 1 cut(s) 283
BspACI CCGC 1 cut(s) 79
BspANI GGCC 2 cut(s) 258, 493
BspLI GGNNCC 2 cut(s) 89, 237
BspMI ACCTGC 1 cut(s) 535
BspT107I GGYRCC 1 cut(s) 87
BssECI CCNNGG 4 cut(s) 82, 91, 241, 283
BssMI GATC 3 cut(s) 9, 108, 119
BssT1I CCWWGG 3 cut(s) 82, 241, 283
Bst4CI ACNGT 4 cut(s) 28, 38, 179, 418
Bst6I CTCTTC 2 cut(s) 241, 286
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 209, 343
BstDSI CCRYGG 1 cut(s) 283
BstKTI GATC 3 cut(s) 12, 111, 122
BstMBI GATC 3 cut(s) 9, 108, 119
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 91
BstSLI GKGCMC 2 cut(s) 90, 177
BstV1I GCAGC 1 cut(s) 121
BsuRI GGCC 2 cut(s) 258, 493
BtgI CCRYGG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 4 cut(s) 43, 51, 195, 414
BveI ACCTGC 1 cut(s) 535
Cac8I GCNNGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 554
CseI GACGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 607
CviAII CATG 3 cut(s) 74, 103, 284
CviJI RGCY 7 cut(s) 67, 134, 230, 236, 258, 493, 587
CviKI_1 RGCY 7 cut(s) 67, 134, 230, 236, 258, 493, 587
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 2 cut(s) 209, 343
DpnI GATC 3 cut(s) 11, 110, 121
DpnII GATC 3 cut(s) 9, 108, 119
DraI TTTAAA 1 cut(s) 316
DraIII CACNNNGTG 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 241, 286
EarI CTCTTC 2 cut(s) 241, 286
Eco130I CCWWGG 3 cut(s) 82, 241, 283
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 554
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 3 cut(s) 82, 241, 283
ErhI CCWWGG 3 cut(s) 82, 241, 283
FaeI CATG 3 cut(s) 77, 106, 287
FaqI GGGAC 2 cut(s) 62, 146
FatI CATG 3 cut(s) 73, 102, 283
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 83
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 2 cut(s) 258, 493
HapII CCGG 2 cut(s) 93, 557
HgaI GACGC 1 cut(s) 311
Hin1II CATG 3 cut(s) 77, 106, 287
HincII GTYRAC 1 cut(s) 476
HindII GTYRAC 1 cut(s) 476
HinfI GANTC 5 cut(s) 4, 17, 56, 322, 527
HpaII CCGG 2 cut(s) 93, 557
HphI GGTGA 2 cut(s) 22, 271
Hpy166II GTNNAC 1 cut(s) 476
Hpy188I TCNGA 3 cut(s) 9, 309, 534
Hpy188III TCNNGA 4 cut(s) 98, 112, 326, 425
Hpy8I GTNNAC 1 cut(s) 476
HpyCH4III ACNGT 4 cut(s) 28, 38, 179, 418
HpyCH4V TGCA 6 cut(s) 137, 149, 200, 206, 410, 600
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 2 cut(s) 209, 343
Hsp92II CATG 3 cut(s) 77, 106, 287
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 3 cut(s) 9, 108, 119
LmnI GCTCC 2 cut(s) 241, 310
LpnPI CCDG 8 cut(s) 49, 106, 144, 159, 339, 530, 570, 585
Lsp1109I GCAGC 1 cut(s) 121
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 3 cut(s) 28, 98, 112
MalI GATC 3 cut(s) 11, 110, 121
MboI GATC 3 cut(s) 9, 108, 119
MboII GAAGA 3 cut(s) 258, 300, 303
MhlI GDGCHC 3 cut(s) 90, 177, 441
MluCI AATT 3 cut(s) 349, 510, 521
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 9 cut(s) 185, 209, 220, 242, 248, 287, 534, 597, 602
MroXI GAANNNNTTC 1 cut(s) 510
MseI TTAA 2 cut(s) 315, 582
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 2 cut(s) 93, 557
MspR9I CCNGG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 515
NciI CCSGG 1 cut(s) 93
NcoI CCATGG 1 cut(s) 283
NdeII GATC 3 cut(s) 9, 108, 119
NlaIII CATG 3 cut(s) 77, 106, 287
NlaIV GGNNCC 2 cut(s) 89, 237
NmuCI GTSAC 3 cut(s) 28, 98, 112
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 4 cut(s) 4, 17, 322, 527
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 89, 237
PspPI GGNCC 1 cut(s) 554
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 2 cut(s) 315, 582
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 3 cut(s) 9, 108, 119
Sau96I GGNCC 1 cut(s) 554
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 3 cut(s) 90, 177, 441
SetI ASST 5 cut(s) 136, 155, 220, 549, 608
SinI GGWCC 1 cut(s) 554
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 423, 593
SmoI CTYRAG 2 cut(s) 423, 593
Sse9I AATT 3 cut(s) 349, 510, 521
SsiI CCGC 1 cut(s) 79
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 3 cut(s) 82, 241, 283
TaaI ACNGT 4 cut(s) 28, 38, 179, 418
TaqI TCGA 2 cut(s) 268, 450
TasI AATT 3 cut(s) 349, 510, 521
TfiI GAWTC 4 cut(s) 4, 17, 322, 527
Tru1I TTAA 2 cut(s) 315, 582
Tru9I TTAA 2 cut(s) 315, 582
TscAI CASTG 4 cut(s) 43, 58, 202, 421
TseFI GTSAC 3 cut(s) 28, 98, 112
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 3 cut(s) 28, 98, 112
TspDTI ATGAA 1 cut(s) 376
TspRI CASTG 4 cut(s) 43, 58, 202, 421
VpaK11BI GGWCC 1 cut(s) 554
XmaJI CCTAGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.