Rmu_sc0001604.1_g000003

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001604.1
Physical Location & Seq
Forward (+)
2115 .. 2699
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001604.1_g000003.1.cds

Sequence Viewer

Length: 585 bp
atgatgagatcacttataccagctgcaaatgtgcctgcaaggttagaagtctccaataaggggcacgatgccacagatagaggtgctgcaaccacacttagtggaggtgtggttaaggccgtggctccccaaaggaagagggggaggccacttggtttgattgacactcacccaaggaataagaggtcgagtaaggcacaaaccgatccattaattatcaatgtagagaatccctttcatgagattgtctctgattatagttatatccatgaatcaatactggaggacgcttcgatgtttgaaatgattctagagaacaaagaaatctcaatgaattatgagggtgtatatgagttgatggaaagatcttccatacacattaatgatgtatttgcatacactattgctcaagaaatcatagagcacgatgatattgaaccacgctctgttgcagaatgtcaacaaagagcagattggcctaaatggaaagaaacaatccatgaagaactagattctctagcaaagagacaggttttttggtccggtagtgctaaccccaccaagtctaaagcttgtaggacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

194

Amino Acids

21.93

Weight (kDa)

5.82

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 200
AdeI CACNNNGTG 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 2 cut(s) 302, 437
AluBI AGCT 2 cut(s) 23, 572
AluI AGCT 2 cut(s) 23, 572
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 3 cut(s) 55, 253, 520
AlwI GGATC 1 cut(s) 200
AoxI GGCC 3 cut(s) 117, 146, 476
ApeKI GCWGC 2 cut(s) 23, 86
ArsI GACNNNNNNTTYG 2 cut(s) 519, 551
AseI ATTAAT 2 cut(s) 212, 381
Asp700I GAANNNNTTC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 540
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 540
BaeGI GKGCMC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 2 cut(s) 10, 73
BccI CCATC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 104
BcoDI GTCTC 3 cut(s) 55, 253, 520
BfaI CTAG 3 cut(s) 311, 509, 518
BglII AGATCT 1 cut(s) 365
BisI GCNGC 2 cut(s) 24, 87
BlsI GCNGC 2 cut(s) 25, 88
Bme18I GGWCC 1 cut(s) 540
BmgT120I GGNCC 1 cut(s) 540
BmiI GGNNCC 1 cut(s) 126
BmsI GCATC 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 393
BsaJI CCNNGG 2 cut(s) 120, 173
BsaWI WCCGGW 1 cut(s) 542
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 120, 173
BseLI CCNNNNNNNGG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 285
BseSI GKGCMC 1 cut(s) 66
BseXI GCAGC 2 cut(s) 10, 73
BshFI GGCC 3 cut(s) 119, 148, 478
BsiHKAI GWGCWC 1 cut(s) 426
BsiSI CCGG 1 cut(s) 543
BslI CCNNNNNNNGG 1 cut(s) 60
BsmAI GTCTC 3 cut(s) 55, 253, 520
BsnI GGCC 3 cut(s) 119, 148, 478
Bsp1286I GDGCHC 2 cut(s) 66, 426
Bsp143I GATC 3 cut(s) 8, 205, 365
BspANI GGCC 3 cut(s) 119, 148, 478
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 126
BspPI GGATC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 285
BssECI CCNNGG 2 cut(s) 120, 173
BssMI GATC 3 cut(s) 8, 205, 365
BssT1I CCWWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 98
BstDSI CCRYGG 1 cut(s) 120
BstKTI GATC 3 cut(s) 11, 208, 368
BstMAI GTCTC 3 cut(s) 55, 253, 520
BstMBI GATC 3 cut(s) 8, 205, 365
BstSLI GKGCMC 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 10, 73
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuRI GGCC 3 cut(s) 119, 148, 478
BtgI CCRYGG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 36
CciI TCATGA 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 540
CseI GACGC 1 cut(s) 296
CspCI CAANNNNNGTGG 2 cut(s) 138, 173
CviAII CATG 3 cut(s) 239, 269, 500
CviJI RGCY 6 cut(s) 23, 119, 125, 148, 478, 572
CviKI_1 RGCY 6 cut(s) 23, 119, 125, 148, 478, 572
DdeI CTNAG 1 cut(s) 98
DpnI GATC 3 cut(s) 10, 207, 367
DpnII GATC 3 cut(s) 8, 205, 365
DraIII CACNNNGTG 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 540
EcoT14I CCWWGG 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 3 cut(s) 242, 272, 503
FatI CATG 3 cut(s) 238, 268, 499
Fnu4HI GCNGC 2 cut(s) 24, 87
Fsp4HI GCNGC 2 cut(s) 24, 87
FspBI CTAG 3 cut(s) 311, 509, 518
GluI GCNGC 2 cut(s) 24, 87
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 3 cut(s) 119, 148, 478
HapII CCGG 1 cut(s) 543
HgaI GACGC 1 cut(s) 296
Hin1II CATG 3 cut(s) 242, 272, 503
HincII GTYRAC 1 cut(s) 461
HindII GTYRAC 1 cut(s) 461
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 4 cut(s) 229, 272, 307, 512
HpaII CCGG 1 cut(s) 543
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 3 cut(s) 239, 311, 410
Hpy8I GTNNAC 1 cut(s) 461
HpyCH4V TGCA 5 cut(s) 26, 38, 89, 395, 452
HpyF3I CTNAG 1 cut(s) 98
Hsp92II CATG 3 cut(s) 242, 272, 503
Kzo9I GATC 3 cut(s) 8, 205, 365
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 5 cut(s) 33, 48, 266, 515, 556
Lsp1109I GCAGC 2 cut(s) 10, 73
LweI GCATC 1 cut(s) 58
MaeI CTAG 3 cut(s) 311, 509, 518
MalI GATC 3 cut(s) 10, 207, 367
MboI GATC 3 cut(s) 8, 205, 365
MboII GAAGA 3 cut(s) 148, 360, 515
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 2 cut(s) 66, 426
MluCI AATT 2 cut(s) 213, 334
MnlI CCTC 7 cut(s) 74, 98, 132, 138, 177, 277, 334
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 3 cut(s) 114, 212, 381
MslI CAYNNNNRTG 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 1 cut(s) 543
NdeII GATC 3 cut(s) 8, 205, 365
NlaIII CATG 3 cut(s) 242, 272, 503
NlaIV GGNNCC 1 cut(s) 126
PagI TCATGA 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 4 cut(s) 229, 272, 307, 512
PkrI GCNGC 2 cut(s) 25, 88
PshBI ATTAAT 2 cut(s) 212, 381
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 540
PsuI RGATCY 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 3 cut(s) 114, 212, 381
SatI GCNGC 2 cut(s) 24, 87
Sau3AI GATC 3 cut(s) 8, 205, 365
Sau96I GGNCC 1 cut(s) 540
SduI GDGCHC 2 cut(s) 66, 426
SetI ASST 7 cut(s) 25, 44, 85, 109, 188, 534, 574
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 408
SmoI CTYRAG 1 cut(s) 408
Sse9I AATT 2 cut(s) 213, 334
SspMI CTAG 3 cut(s) 311, 509, 518
StyI CCWWGG 1 cut(s) 173
TaqI TCGA 2 cut(s) 188, 293
TasI AATT 2 cut(s) 213, 334
TfiI GAWTC 4 cut(s) 229, 272, 307, 512
Tru1I TTAA 3 cut(s) 114, 212, 381
Tru9I TTAA 3 cut(s) 114, 212, 381
TseI GCWGC 2 cut(s) 23, 86
TspDTI ATGAA 4 cut(s) 227, 285, 347, 516
VpaK11BI GGWCC 1 cut(s) 540
VspI ATTAAT 2 cut(s) 212, 381
XbaI TCTAGA 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 3 cut(s) 311, 509, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.