Rmu_sc0003708.1_g000002

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003708.1
OG0000161
Physical Location & Seq
Forward (+)
2862 .. 3592
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003708.1_g000002.1.cds

Sequence Viewer

Length: 465 bp
atggttctggtggatgcttcgacacgctggtcacatgtcgttttattgtctacaagaaatgctgcatttgtaaaactcctagcacagattatacgcttaaggactcaccaccctgatcaccctatcaagtctataaggcttgataacgctggagaacccactgctagccaaccattttctgcgtaccagttggtaactggatatgagcttgacatttcacacttacgcatatttggttgcacaatatatgtgcctattgcgccccaacagcgcaccaaaatgggtctccagagacgattaggcgatctctttaccgctagatttgcggattgtcactttgatgagacagtcttcctgtcgttagggggagataggaaaaaagattttccaatggaacgacaagaattgtcgtggtttgtccccactctgtctcatgttgatcccgcacttcacaatgtgaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

154

Amino Acids

17.55

Weight (kDa)

9.06

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 50
AciI CCGC 3 cut(s) 315, 326, 444
AclWI GGATC 1 cut(s) 434
AdeI CACNNNGTG 1 cut(s) 457
AfaI GTAC 1 cut(s) 185
AflII CTTAAG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 34
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw26I GTCTC 4 cut(s) 286, 290, 338, 435
AlwI GGATC 1 cut(s) 434
ApeKI GCWGC 1 cut(s) 62
AspLEI GCGC 2 cut(s) 262, 273
AsuHPI GGTGA 2 cut(s) 98, 110
AsuNHI GCTAGC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 343
BbvI GCAGC 1 cut(s) 49
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 4 cut(s) 286, 290, 338, 435
BfaI CTAG 3 cut(s) 80, 165, 318
BfrI CTTAAG 1 cut(s) 97
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmsI GCATC 1 cut(s) 4
BmtI GCTAGC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 343
BpmI CTGGAG 2 cut(s) 171, 272
BsaI GGTCTC 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 187, 202
BseGI GGATG 1 cut(s) 19
BseNI ACTGG 2 cut(s) 187, 202
BseXI GCAGC 1 cut(s) 49
BslFI GGGAC 1 cut(s) 404
BsmAI GTCTC 4 cut(s) 286, 290, 338, 435
BsmBI CGTCTC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 404
Bso31I GGTCTC 1 cut(s) 290
Bsp143I GATC 3 cut(s) 115, 304, 439
BspACI CCGC 3 cut(s) 315, 326, 444
BspOI GCTAGC 1 cut(s) 168
BspPI GGATC 1 cut(s) 434
BspTI CTTAAG 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 290
BsrI ACTGG 2 cut(s) 187, 202
BssMI GATC 3 cut(s) 115, 304, 439
Bst4CI ACNGT 1 cut(s) 349
BstAFI CTTAAG 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 166
BstF5I GGATG 1 cut(s) 19
BstHHI GCGC 2 cut(s) 262, 273
BstKTI GATC 3 cut(s) 118, 307, 442
BstMAI GTCTC 4 cut(s) 286, 290, 338, 435
BstMBI GATC 3 cut(s) 115, 304, 439
BstMWI GCNNNNNNNGC 3 cut(s) 259, 268, 323
BstNSI RCATGY 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 343
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 2 cut(s) 262, 273
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 35, 434
CviJI RGCY 3 cut(s) 139, 168, 208
CviKI_1 RGCY 3 cut(s) 139, 168, 208
CviQI GTAC 1 cut(s) 184
DpnI GATC 3 cut(s) 117, 306, 441
DpnII GATC 3 cut(s) 115, 304, 439
DraIII CACNNNGTG 1 cut(s) 457
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 290
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 2 cut(s) 38, 437
FaiI YATR 8 cut(s) 36, 92, 134, 204, 230, 247, 249, 435
FaqI GGGAC 1 cut(s) 404
FatI CATG 2 cut(s) 34, 433
FauI CCCGC 1 cut(s) 451
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 3 cut(s) 80, 165, 318
GlaI GCGC 2 cut(s) 261, 272
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 2 cut(s) 171, 272
HhaI GCGC 2 cut(s) 262, 273
Hin1II CATG 2 cut(s) 38, 437
Hin6I GCGC 2 cut(s) 260, 271
HinP1I GCGC 2 cut(s) 260, 271
HinfI GANTC 1 cut(s) 103
HphI GGTGA 2 cut(s) 98, 110
Hpy166II GTNNAC 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4V TGCA 2 cut(s) 65, 240
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 268, 323
Hsp92II CATG 2 cut(s) 38, 437
HspAI GCGC 2 cut(s) 260, 271
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 115, 304, 439
LpnPI CCDG 7 cut(s) 13, 126, 135, 183, 200, 302, 368
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 80, 165, 318
MaeIII GTNAC 3 cut(s) 30, 193, 332
MalI GATC 3 cut(s) 117, 306, 441
MboI GATC 3 cut(s) 115, 304, 439
MboII GAAGA 1 cut(s) 343
MluCI AATT 1 cut(s) 404
MlyI GAGTC 1 cut(s) 97
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 2 cut(s) 278, 339
MspCI CTTAAG 1 cut(s) 97
MwoI GCNNNNNNNGC 3 cut(s) 259, 268, 323
NdeII GATC 3 cut(s) 115, 304, 439
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 2 cut(s) 38, 437
NmuCI GTSAC 2 cut(s) 30, 332
NspI RCATGY 1 cut(s) 38
PciI ACATGT 1 cut(s) 34
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PscI ACATGT 1 cut(s) 34
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 2 cut(s) 278, 339
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 115, 304, 439
SchI GAGTC 1 cut(s) 97
SetI ASST 1 cut(s) 210
SfaNI GCATC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 278, 339
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 1 cut(s) 404
SsiI CCGC 3 cut(s) 315, 326, 444
SspMI CTAG 3 cut(s) 80, 165, 318
TaaI ACNGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 404
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 30, 332
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 2 cut(s) 30, 332
TspRI CASTG 1 cut(s) 166
Vha464I CTTAAG 1 cut(s) 97
XceI RCATGY 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 50
XspI CTAG 3 cut(s) 80, 165, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.