Rroxscaffold_6G00394150

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000161
Physical Location & Seq
Forward (+)
14502766 .. 14512606
9841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394150.1

Sequence Viewer

Length: 312 bp
ATGTTCACACCCAAGATGGTCTTGCGAGATAAAATCTTGGTAATGCGCACCAAGCTTCTAATTTCTCGCACGGAGCTATGCAATCTTGCATGCAGCTATGTTGGTCCCGTTGAGGCCCACCGCTACCAACCTTACTCCGCGTTACAGCCGGTGACCGGGTACAAACTCGATGTTTCGCACTTACGCGCATTTGGGTATGCAGTCCTCGTGCCAATTGTGCCGTCACAACGTACAAAATTGGGTCCTCAACAAAGGATGGGCATACATGTCGATTATGAGTCCCATCCATTATGTGCTCTTTCGAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

103

Amino Acids

11.6

Weight (kDa)

9.51

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 47
AccII CGCG 2 cut(s) 140, 186
AciI CCGC 2 cut(s) 121, 138
AfaI GTAC 2 cut(s) 161, 232
AfiI CCNNNNNNNGG 1 cut(s) 155
AflIII ACRYGT 1 cut(s) 265
AluBI AGCT 3 cut(s) 55, 76, 96
AluI AGCT 3 cut(s) 55, 76, 96
Alw21I GWGCWC 1 cut(s) 298
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 93
AspLEI GCGC 2 cut(s) 48, 188
AspS9I GGNCC 3 cut(s) 104, 115, 242
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 163
AvaII GGWCC 2 cut(s) 104, 242
BanII GRGCYC 1 cut(s) 308
BauI CACGAG 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 105
BccI CCATC 3 cut(s) 10, 250, 291
BceAI ACGGC 1 cut(s) 205
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BcnI CCSGG 1 cut(s) 157
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 2 cut(s) 104, 242
BmgT120I GGNCC 3 cut(s) 104, 115, 242
BmiI GGNNCC 2 cut(s) 106, 243
BmrFI CCNGG 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 148
BseGI GGATG 2 cut(s) 261, 283
BseLI CCNNNNNNNGG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 105
Bsh1236I CGCG 2 cut(s) 140, 186
BshFI GGCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 2 cut(s) 149, 156
BslFI GGGAC 2 cut(s) 90, 265
BslI CCNNNNNNNGG 1 cut(s) 155
BsmFI GGGAC 2 cut(s) 90, 265
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 298, 308
BspACI CCGC 2 cut(s) 121, 138
BspANI GGCC 1 cut(s) 116
BspFNI CGCG 2 cut(s) 140, 186
BspLI GGNNCC 2 cut(s) 106, 243
BsrFI RCCGGY 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 148
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 91
BstEII GGTNACC 1 cut(s) 151
BstF5I GGATG 2 cut(s) 261, 283
BstFNI CGCG 2 cut(s) 140, 186
BstHHI GCGC 2 cut(s) 48, 188
BstMWI GCNNNNNNNGC 2 cut(s) 52, 217
BstNSI RCATGY 2 cut(s) 93, 269
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 155
BstUI CGCG 2 cut(s) 140, 186
BstV1I GCAGC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 116
BtsCI GGATG 2 cut(s) 261, 283
Cac8I GCNNGC 1 cut(s) 91
CfoI GCGC 2 cut(s) 48, 188
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 3 cut(s) 104, 115, 242
Csp6I GTAC 2 cut(s) 160, 231
CviAII CATG 2 cut(s) 90, 266
CviJI RGCY 6 cut(s) 55, 76, 96, 116, 148, 306
CviKI_1 RGCY 6 cut(s) 55, 76, 96, 116, 148, 306
CviQI GTAC 2 cut(s) 160, 231
Eco24I GRGCYC 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 104, 242
Eco91I GGTNACC 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 308
FaeI CATG 2 cut(s) 93, 269
FaiI YATR 8 cut(s) 79, 91, 99, 198, 263, 267, 276, 292
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 2 cut(s) 90, 265
FatI CATG 2 cut(s) 89, 265
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 2 cut(s) 268, 270
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 94
FspAI RTGCGCAY 1 cut(s) 47
FspI TGCGCA 1 cut(s) 47
GlaI GCGC 2 cut(s) 47, 187
GluI GCNGC 1 cut(s) 94
HaeIII GGCC 1 cut(s) 116
HapII CCGG 2 cut(s) 149, 156
HhaI GCGC 2 cut(s) 48, 188
Hin1II CATG 2 cut(s) 93, 269
Hin6I GCGC 2 cut(s) 46, 186
HinP1I GCGC 2 cut(s) 46, 186
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 1 cut(s) 278
HpaII CCGG 2 cut(s) 149, 156
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 4 cut(s) 81, 89, 93, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 217
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 2 cut(s) 93, 269
HspAI GCGC 2 cut(s) 46, 186
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 2 cut(s) 162, 169
Lsp1109I GCAGC 1 cut(s) 105
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 3 cut(s) 141, 151, 222
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 298, 308
MluCI AATT 3 cut(s) 60, 213, 236
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 3 cut(s) 106, 215, 255
MspI CCGG 2 cut(s) 149, 156
MspR9I CCNGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 213
MvnI CGCG 2 cut(s) 140, 186
MwoI GCNNNNNNNGC 2 cut(s) 52, 217
NciI CCSGG 1 cut(s) 157
NlaIII CATG 2 cut(s) 93, 269
NlaIV GGNNCC 2 cut(s) 106, 243
NmuCI GTSAC 2 cut(s) 151, 222
NsbI TGCGCA 1 cut(s) 47
NspI RCATGY 2 cut(s) 93, 269
PaeI GCATGC 1 cut(s) 93
PciI ACATGT 1 cut(s) 265
PkrI GCNGC 1 cut(s) 95
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PpuMI RGGWCCY 1 cut(s) 242
PscI ACATGT 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 242
PspEI GGTNACC 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 106, 243
PspPI GGNCC 3 cut(s) 104, 115, 242
PspPPI RGGWCCY 1 cut(s) 242
RsaI GTAC 2 cut(s) 161, 232
RsaNI GTAC 2 cut(s) 160, 231
SatI GCNGC 1 cut(s) 94
Sau96I GGNCC 3 cut(s) 104, 115, 242
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 2 cut(s) 298, 308
SetI ASST 5 cut(s) 57, 78, 98, 133, 232
SinI GGWCC 2 cut(s) 104, 242
SphI GCATGC 1 cut(s) 93
Sse9I AATT 3 cut(s) 60, 213, 236
SsiI CCGC 2 cut(s) 121, 138
StyD4I CCNGG 1 cut(s) 155
TaiI ACGT 1 cut(s) 232
TaqI TCGA 3 cut(s) 168, 270, 302
TasI AATT 3 cut(s) 60, 213, 236
TseFI GTSAC 2 cut(s) 151, 222
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 2 cut(s) 151, 222
TspGWI ACGGA 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 104, 242
XceI RCATGY 2 cut(s) 93, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.