Rmu_sc0003200.1_g000007

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003200.1
OG0000161
Physical Location & Seq
Reverse (-)
26243 .. 26983
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003200.1_g000007.1.cds

Sequence Viewer

Length: 741 bp
atgggtccccagagacgattaagtatttatgttggatacgaatctccaacaattctacgctacttggaacccttgacaggcgatctctttaccgctagatttgcgaattttcactttgatgagacagtcttcctgtcgttagggggagataggaaaaaggattttccaagggaacaacaggaattgtcgtggtttatccccactctatctcattttgatccccgcacttcacaatgtgaaagtgaagtgaaaagaataatcgatcttcaaaatgtagcagattcgatgcctgatgcgtttactgatatcgtaaaagtgatgagatcacatatactaataccagctgcaaatgtgcctgcaaggttagaaatccccaacaaggggcaaggtgccgcagatagaggcactgcaaccacacttagtggaggtgtggttgaggctgtggctccccaaaggaagagggggaggccacttggttcgattgacactcacccaaggaagaagagggcgagcaaggcacaaactgatccattaattatcaatatagagaatccctctcatgagattgtctctgattatagttatgtccatgaatcaatactggaggacgctccaatgtttgaaaagattccaaagaacaaagaaatctcaatggattatgagagtgcatatgagttgatagaaagatcttccatacacattgatatgtatttgcatacaccattgctcaagaaatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

246

Amino Acids

27.84

Weight (kDa)

6.25

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AciI CCGC 3 cut(s) 93, 223, 393
AclWI GGATC 2 cut(s) 212, 521
AcsI RAATTY 1 cut(s) 106
AdeI CACNNNGTG 2 cut(s) 236, 422
AfiI CCNNNNNNNGG 4 cut(s) 77, 379, 380, 381
AgsI TTSAA 2 cut(s) 269, 623
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
Alw26I GTCTC 3 cut(s) 7, 116, 574
AlwI GGATC 2 cut(s) 212, 521
AoxI GGCC 1 cut(s) 467
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 106
AseI ATTAAT 1 cut(s) 533
Asp700I GAANNNNTTC 1 cut(s) 627
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 1 cut(s) 482
AvaII GGWCC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 331
BciVI GTATCC 1 cut(s) 29
BcoDI GTCTC 3 cut(s) 7, 116, 574
BfaI CTAG 1 cut(s) 96
BfuI GTATCC 1 cut(s) 29
BglII AGATCT 1 cut(s) 686
BisI GCNGC 2 cut(s) 345, 393
BlsI GCNGC 2 cut(s) 346, 394
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 5 cut(s) 6, 7, 69, 391, 447
BmsI GCATC 2 cut(s) 276, 283
BpiI GAAGAC 1 cut(s) 121
BplI GAGNNNNNCTC 4 cut(s) 539, 571, 554, 586
BpmI CTGGAG 1 cut(s) 623
BpuEI CTTGAG 1 cut(s) 713
Bsa29I ATCGAT 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 167, 494
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 379, 380, 381
Bse1I ACTGG 1 cut(s) 606
Bse3DI GCAATG 1 cut(s) 722
Bse8I GATNNNNATC 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 167, 494
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 4 cut(s) 77, 379, 380, 381
BseMI GCAATG 1 cut(s) 722
BseNI ACTGG 1 cut(s) 606
BseXI GCAGC 1 cut(s) 331
BshFI GGCC 1 cut(s) 469
BshNI GGYRCC 1 cut(s) 389
BshVI ATCGAT 1 cut(s) 261
BslI CCNNNNNNNGG 4 cut(s) 77, 379, 380, 381
BsmAI GTCTC 3 cut(s) 7, 116, 574
BsmBI CGTCTC 1 cut(s) 7
BsnI GGCC 1 cut(s) 469
Bsp143I GATC 6 cut(s) 82, 217, 262, 323, 526, 686
BspACI CCGC 3 cut(s) 93, 223, 393
BspANI GGCC 1 cut(s) 469
BspDI ATCGAT 1 cut(s) 261
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 5 cut(s) 6, 7, 69, 391, 447
BspPI GGATC 2 cut(s) 212, 521
BspT107I GGYRCC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 722
BsrI ACTGG 1 cut(s) 606
BssECI CCNNGG 2 cut(s) 167, 494
BssMI GATC 6 cut(s) 82, 217, 262, 323, 526, 686
BssT1I CCWWGG 2 cut(s) 167, 494
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 2 cut(s) 452, 497
BstC8I GCNNGC 2 cut(s) 357, 511
BstDEI CTNAG 1 cut(s) 419
BstKTI GATC 6 cut(s) 85, 220, 265, 326, 529, 689
BstMAI GTCTC 3 cut(s) 7, 116, 574
BstMBI GATC 6 cut(s) 82, 217, 262, 323, 526, 686
BstMWI GCNNNNNNNGC 2 cut(s) 101, 515
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 686
BstYI RGATCY 1 cut(s) 686
Bsu15I ATCGAT 1 cut(s) 261
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 1 cut(s) 469
BsuTUI ATCGAT 1 cut(s) 261
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 2 cut(s) 357, 511
CciI TCATGA 1 cut(s) 559
Cfr13I GGNCC 1 cut(s) 5
ClaI ATCGAT 1 cut(s) 261
CseI GACGC 1 cut(s) 617
CviAII CATG 2 cut(s) 560, 590
CviJI RGCY 4 cut(s) 344, 440, 446, 469
CviKI_1 RGCY 4 cut(s) 344, 440, 446, 469
DdeI CTNAG 1 cut(s) 419
DpnI GATC 6 cut(s) 84, 219, 264, 325, 528, 688
DpnII GATC 6 cut(s) 82, 217, 262, 323, 526, 686
DraIII CACNNNGTG 2 cut(s) 236, 422
Eam1104I CTCTTC 2 cut(s) 452, 497
EarI CTCTTC 2 cut(s) 452, 497
Eco130I CCWWGG 2 cut(s) 167, 494
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 5
EcoRV GATATC 1 cut(s) 307
EcoT14I CCWWGG 2 cut(s) 167, 494
ErhI CCWWGG 2 cut(s) 167, 494
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 2 cut(s) 563, 593
FatI CATG 2 cut(s) 559, 589
FauI CCCGC 1 cut(s) 230
FauNDI CATATG 1 cut(s) 670
Fnu4HI GCNGC 2 cut(s) 345, 393
Fsp4HI GCNGC 2 cut(s) 345, 393
FspBI CTAG 1 cut(s) 96
GluI GCNGC 2 cut(s) 345, 393
GsuI CTGGAG 1 cut(s) 623
HaeIII GGCC 1 cut(s) 469
HgaI GACGC 1 cut(s) 617
Hin1II CATG 2 cut(s) 563, 593
HinfI GANTC 5 cut(s) 41, 281, 550, 593, 628
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 1 cut(s) 574
Hpy188III TCNNGA 2 cut(s) 560, 730
Hpy8I GTNNAC 1 cut(s) 300
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 5 cut(s) 347, 359, 410, 668, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 515
HpyF3I CTNAG 1 cut(s) 419
Hsp92II CATG 2 cut(s) 563, 593
KflI GGGWCCC 1 cut(s) 5
Kzo9I GATC 6 cut(s) 82, 217, 262, 323, 526, 686
LmnI GCTCC 2 cut(s) 451, 616
LpnPI CCDG 8 cut(s) 23, 63, 146, 164, 303, 354, 369, 587
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 2 cut(s) 276, 283
MaeI CTAG 1 cut(s) 96
MalI GATC 6 cut(s) 84, 219, 264, 325, 528, 688
MboI GATC 6 cut(s) 82, 217, 262, 323, 526, 686
MboII GAAGA 6 cut(s) 121, 257, 469, 511, 514, 681
MflI RGATCY 1 cut(s) 686
MluCI AATT 4 cut(s) 51, 106, 182, 534
MmeI TCCRAC 2 cut(s) 13, 71
MnlI CCTC 8 cut(s) 395, 419, 430, 453, 459, 498, 565, 598
MroXI GAANNNNTTC 1 cut(s) 627
MseI TTAA 2 cut(s) 20, 533
MslI CAYNNNNRTG 2 cut(s) 117, 704
MspA1I CMGCKG 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 101, 515
NdeI CATATG 1 cut(s) 670
NdeII GATC 6 cut(s) 82, 217, 262, 323, 526, 686
NlaIII CATG 2 cut(s) 563, 593
NlaIV GGNNCC 5 cut(s) 6, 7, 69, 391, 447
PagI TCATGA 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 5 cut(s) 41, 281, 550, 593, 628
PkrI GCNGC 2 cut(s) 346, 394
PpuMI RGGWCCY 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 533
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 5 cut(s) 6, 7, 69, 391, 447
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PsuI RGATCY 1 cut(s) 686
PvuII CAGCTG 1 cut(s) 344
RseI CAYNNNNRTG 2 cut(s) 117, 704
SaqAI TTAA 2 cut(s) 20, 533
SatI GCNGC 2 cut(s) 345, 393
Sau3AI GATC 6 cut(s) 82, 217, 262, 323, 526, 686
Sau96I GGNCC 1 cut(s) 5
SetI ASST 4 cut(s) 346, 365, 391, 430
SfaNI GCATC 2 cut(s) 276, 283
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 2 cut(s) 117, 704
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
Sse9I AATT 4 cut(s) 51, 106, 182, 534
SsiI CCGC 3 cut(s) 93, 223, 393
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 2 cut(s) 167, 494
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 3 cut(s) 261, 284, 479
TasI AATT 4 cut(s) 51, 106, 182, 534
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 5 cut(s) 41, 281, 550, 593, 628
Tru1I TTAA 2 cut(s) 20, 533
Tru9I TTAA 2 cut(s) 20, 533
TscAI CASTG 1 cut(s) 412
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 606
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 5
VspI ATTAAT 1 cut(s) 533
XapI RAATTY 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.