Rroxscaffold_3G00223490

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000161
Physical Location & Seq
Reverse (-)
6576111 .. 6576871
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223490.1

Sequence Viewer

Length: 522 bp
ATGGTATTGGTTGATGCGTCGACACGCTGGTCACATGTCGCGCCGTTGTCCACTCGAAATGCCGCTTATGCTAAACTCCTCGCCCGCATTATCCGTCTACGGGCTCACTACCTTGACCATCCTATTAAGTCAATTCGACTTGATAATGATGGGGAGTTTACATCACCGGTAGAGCACGATATCTCGCACTTAGACATCTTTGGGTGTGCCATTTATGTGCCTATTACGCCGCCACAAGATACTAAGATGGGTCTACAACGACGAATGGGACTTTATGTTGGATATGAATCTCAACCATCGTCTCGCTACCTTGAACCCTTGACAAGCGATCTCTTTACCGCTAGATTTGCGGATTGTCACTTTGATGAGACAATCTTCCCATCGTTAGGGGGAGATAAGAACACGGATGTTGAACAGAACGACGGGGAATTGTCATGGTCCGTCCCCACTATGTCTCATCTCGATCCCCGTACCGCACGGTCCGAACTTGAAGTGCGAAGAATAATCGAGCTCCGAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

173

Amino Acids

19.67

Weight (kDa)

5.77

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AccI GTMKAC 3 cut(s) 20, 97, 253
AccII CGCG 1 cut(s) 41
AciI CCGC 6 cut(s) 63, 85, 230, 339, 350, 474
AclWI GGATC 1 cut(s) 458
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 2 cut(s) 100, 386
AflIII ACRYGT 1 cut(s) 34
AgeI ACCGGT 1 cut(s) 166
AgsI TTSAA 3 cut(s) 314, 413, 491
AluBI AGCT 1 cut(s) 511
AluI AGCT 1 cut(s) 511
Alw21I GWGCWC 2 cut(s) 177, 513
Alw26I GTCTC 3 cut(s) 306, 362, 459
AlwI GGATC 1 cut(s) 458
AsiGI ACCGGT 1 cut(s) 166
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 438, 480
AsuHPI GGTGA 1 cut(s) 156
AvaII GGWCC 2 cut(s) 438, 480
BanII GRGCYC 2 cut(s) 106, 513
Bbv12I GWGCWC 2 cut(s) 177, 513
BccI CCATC 5 cut(s) 126, 143, 241, 304, 388
BceAI ACGGC 1 cut(s) 28
BcoDI GTCTC 3 cut(s) 306, 362, 459
BfaI CTAG 1 cut(s) 342
BisI GCNGC 2 cut(s) 63, 230
BlsI GCNGC 2 cut(s) 64, 231
Bme18I GGWCC 2 cut(s) 438, 480
BmgT120I GGNCC 2 cut(s) 438, 480
BmsI GCATC 1 cut(s) 4
BsaBI GATNNNNATC 1 cut(s) 286
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 386
Bse118I RCCGGY 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 286
BseGI GGATG 2 cut(s) 118, 412
BseJI GATNNNNATC 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 100, 386
BseRI GAGGAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 41
BshTI ACCGGT 1 cut(s) 166
BsiHKAI GWGCWC 2 cut(s) 177, 513
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 2 cut(s) 282, 428
BslI CCNNNNNNNGG 2 cut(s) 100, 386
BsmAI GTCTC 3 cut(s) 306, 362, 459
BsmBI CGTCTC 1 cut(s) 306
BsmFI GGGAC 2 cut(s) 282, 428
Bsp1286I GDGCHC 3 cut(s) 106, 177, 513
Bsp143I GATC 2 cut(s) 328, 463
BspACI CCGC 6 cut(s) 63, 85, 230, 339, 350, 474
BspFNI CGCG 1 cut(s) 41
BspPI GGATC 1 cut(s) 458
BsrFI RCCGGY 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 166
BssMI GATC 2 cut(s) 328, 463
Bst4CI ACNGT 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 190, 243
BstF5I GGATG 2 cut(s) 118, 412
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 2 cut(s) 331, 466
BstMAI GTCTC 3 cut(s) 306, 362, 459
BstMBI GATC 2 cut(s) 328, 463
BstMWI GCNNNNNNNGC 3 cut(s) 68, 226, 347
BstNSI RCATGY 1 cut(s) 38
BstUI CGCG 1 cut(s) 41
BtsCI GGATG 2 cut(s) 118, 412
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 438, 480
CpoI CGGWCCG 1 cut(s) 480
CseI GACGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 471
CspAI ACCGGT 1 cut(s) 166
CspI CGGWCCG 1 cut(s) 480
CviAII CATG 2 cut(s) 35, 435
CviJI RGCY 2 cut(s) 104, 511
CviKI_1 RGCY 2 cut(s) 104, 511
CviQI GTAC 1 cut(s) 471
DdeI CTNAG 2 cut(s) 190, 243
DpnI GATC 2 cut(s) 330, 465
DpnII GATC 2 cut(s) 328, 463
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 511
Eco24I GRGCYC 2 cut(s) 106, 513
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 2 cut(s) 438, 480
Eco53kI GAGCTC 1 cut(s) 511
EcoICRI GAGCTC 1 cut(s) 511
EcoRV GATATC 1 cut(s) 181
EcoT38I GRGCYC 2 cut(s) 106, 513
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 2 cut(s) 38, 438
FaiI YATR 7 cut(s) 36, 69, 216, 276, 285, 436, 452
FaqI GGGAC 2 cut(s) 282, 428
FatI CATG 2 cut(s) 34, 434
FauI CCCGC 1 cut(s) 92
FblI GTMKAC 3 cut(s) 20, 97, 253
Fnu4HI GCNGC 2 cut(s) 63, 230
FokI GGATG 2 cut(s) 105, 419
FriOI GRGCYC 2 cut(s) 106, 513
Fsp4HI GCNGC 2 cut(s) 63, 230
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 42
GluI GCNGC 2 cut(s) 63, 230
HapII CCGG 1 cut(s) 167
HgaI GACGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 43
Hin1II CATG 2 cut(s) 38, 438
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 287
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 156
Hpy166II GTNNAC 5 cut(s) 21, 51, 98, 159, 254
Hpy188I TCNGA 2 cut(s) 484, 515
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 5 cut(s) 21, 51, 98, 159, 254
Hpy99I CGWCG 3 cut(s) 22, 264, 425
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4IV ACGT 1 cut(s) 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 226, 347
HpyF3I CTNAG 2 cut(s) 190, 243
HpySE526I ACGT 1 cut(s) 518
Hsp92II CATG 2 cut(s) 38, 438
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 328, 463
LmnI GCTCC 1 cut(s) 516
LpnPI CCDG 2 cut(s) 13, 180
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 518
MaeIII GTNAC 2 cut(s) 30, 356
MalI GATC 2 cut(s) 330, 465
MboI GATC 2 cut(s) 328, 463
MboII GAAGA 2 cut(s) 367, 510
MhlI GDGCHC 3 cut(s) 106, 177, 513
MluCI AATT 2 cut(s) 132, 428
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 1 cut(s) 89
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 215, 363
MspI CCGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 3 cut(s) 68, 226, 347
NdeII GATC 2 cut(s) 328, 463
NlaIII CATG 2 cut(s) 38, 438
NmuCI GTSAC 2 cut(s) 30, 356
NspI RCATGY 1 cut(s) 38
PciI ACATGT 1 cut(s) 34
PfeI GAWTC 1 cut(s) 287
PinAI ACCGGT 1 cut(s) 166
PkrI GCNGC 2 cut(s) 64, 231
PscI ACATGT 1 cut(s) 34
Psp124BI GAGCTC 1 cut(s) 513
PspPI GGNCC 2 cut(s) 438, 480
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 2 cut(s) 215, 363
Rsr2I CGGWCCG 1 cut(s) 480
RsrII CGGWCCG 1 cut(s) 480
SacI GAGCTC 1 cut(s) 513
SalI GTCGAC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 63, 230
Sau3AI GATC 2 cut(s) 328, 463
Sau96I GGNCC 2 cut(s) 438, 480
SduI GDGCHC 3 cut(s) 106, 177, 513
SetI ASST 4 cut(s) 114, 312, 513, 521
SfaNI GCATC 1 cut(s) 4
SinI GGWCC 2 cut(s) 438, 480
SmiMI CAYNNNNRTG 2 cut(s) 215, 363
Sse9I AATT 2 cut(s) 132, 428
SsiI CCGC 6 cut(s) 63, 85, 230, 339, 350, 474
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 1 cut(s) 513
TaaI ACNGT 1 cut(s) 480
TaiI ACGT 1 cut(s) 521
TaqI TCGA 5 cut(s) 20, 55, 136, 462, 507
TasI AATT 2 cut(s) 132, 428
TauI GCSGC 2 cut(s) 65, 232
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 2 cut(s) 30, 356
Tsp45I GTSAC 2 cut(s) 30, 356
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 3 cut(s) 83, 419, 430
VpaK11BI GGWCC 2 cut(s) 438, 480
XceI RCATGY 1 cut(s) 38
XmiI GTMKAC 3 cut(s) 20, 97, 253
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.