Rmu_sc0001231.1_g000015

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001231.1
Physical Location & Seq
Forward (+)
38294 .. 38722
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001231.1_g000015.1.cds

Sequence Viewer

Length: 429 bp
atgcctgatgcgtttactgatagcgcaaaagtgacgagatcacatatactagctgcaaatgtgtctgcatggttagaagtctccaataaggggcacaatgcagcagatagaggcgctgcaaccacacttagtggaggtgtggttgatgccgtgactccccaaagaaagagggggaggccacttggttcgattgacactcacccaaggaagaagagggtgagtaaggcacaaacctatccattagtcataaatgtacagaatccctctcatgagattgtctttgattacagttatgtccatgaatcaatactggaggatgctccgatgtttgaaatgatttcagagaacaaagaaatctcaatggattatgagagtgtgtacgagttgatagaaagatcatccatacacattgatgatgtatttgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

15.79

Weight (kDa)

5.63

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 131
AfaI GTAC 2 cut(s) 255, 380
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 332
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 85
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 3 cut(s) 53, 101, 116
AspLEI GCGC 2 cut(s) 26, 116
AsuHPI GGTGA 2 cut(s) 191, 229
BaeGI GKGCMC 1 cut(s) 96
BbvI GCAGC 3 cut(s) 40, 103, 113
BceAI ACGGC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 3 cut(s) 54, 102, 117
BlsI GCNGC 3 cut(s) 55, 103, 118
BmsI GCATC 2 cut(s) 136, 307
BpmI CTGGAG 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 2 cut(s) 322, 398
BseLI CCNNNNNNNGG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 315
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 3 cut(s) 40, 103, 113
BshFI GGCC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 85
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 253
Bsp143I GATC 2 cut(s) 38, 395
BspANI GGCC 1 cut(s) 178
BspHI TCATGA 1 cut(s) 268
BsrGI TGTACA 1 cut(s) 253
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 38, 395
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 322, 398
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 2 cut(s) 26, 116
BstKTI GATC 2 cut(s) 41, 398
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 2 cut(s) 38, 395
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 3 cut(s) 40, 103, 113
BsuRI GGCC 1 cut(s) 178
BtsCI GGATG 2 cut(s) 322, 398
CciI TCATGA 1 cut(s) 268
CfoI GCGC 2 cut(s) 26, 116
Csp6I GTAC 2 cut(s) 254, 379
CviAII CATG 3 cut(s) 69, 269, 299
CviJI RGCY 2 cut(s) 53, 178
CviKI_1 RGCY 2 cut(s) 53, 178
CviQI GTAC 2 cut(s) 254, 379
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 40, 397
DpnII GATC 2 cut(s) 38, 395
DraIII CACNNNGTG 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 3 cut(s) 72, 272, 302
FatI CATG 3 cut(s) 68, 268, 298
Fnu4HI GCNGC 3 cut(s) 54, 102, 117
FokI GGATG 2 cut(s) 329, 385
Fsp4HI GCNGC 3 cut(s) 54, 102, 117
FspBI CTAG 1 cut(s) 50
GlaI GCGC 2 cut(s) 25, 115
GluI GCNGC 3 cut(s) 54, 102, 117
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 178
HhaI GCGC 2 cut(s) 26, 116
Hin1II CATG 3 cut(s) 72, 272, 302
Hin6I GCGC 2 cut(s) 24, 114
HinP1I GCGC 2 cut(s) 24, 114
HinfI GANTC 3 cut(s) 154, 259, 302
HphI GGTGA 2 cut(s) 191, 229
Hpy166II GTNNAC 2 cut(s) 15, 379
Hpy188I TCNGA 2 cut(s) 324, 343
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 2 cut(s) 15, 379
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4V TGCA 5 cut(s) 56, 68, 101, 119, 425
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 3 cut(s) 72, 272, 302
HspAI GCGC 2 cut(s) 24, 114
Kzo9I GATC 2 cut(s) 38, 395
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 2 cut(s) 18, 296
Lsp1109I GCAGC 3 cut(s) 40, 103, 113
LweI GCATC 2 cut(s) 136, 307
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 2 cut(s) 31, 151
MalI GATC 2 cut(s) 40, 397
MboI GATC 2 cut(s) 38, 395
MboII GAAGA 2 cut(s) 220, 223
MhlI GDGCHC 1 cut(s) 96
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 7 cut(s) 104, 128, 162, 168, 207, 274, 307
MslI CAYNNNNRTG 1 cut(s) 411
NdeII GATC 2 cut(s) 38, 395
NlaIII CATG 3 cut(s) 72, 272, 302
NmuCI GTSAC 2 cut(s) 31, 151
PagI TCATGA 1 cut(s) 268
PfeI GAWTC 2 cut(s) 259, 302
PkrI GCNGC 3 cut(s) 55, 103, 118
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
RsaI GTAC 2 cut(s) 255, 380
RsaNI GTAC 2 cut(s) 254, 379
RseI CAYNNNNRTG 1 cut(s) 411
SatI GCNGC 3 cut(s) 54, 102, 117
Sau3AI GATC 2 cut(s) 38, 395
SchI GAGTC 1 cut(s) 148
SduI GDGCHC 1 cut(s) 96
SetI ASST 3 cut(s) 55, 139, 236
SfaNI GCATC 2 cut(s) 136, 307
SmiMI CAYNNNNRTG 1 cut(s) 411
SspMI CTAG 1 cut(s) 50
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 290
TaqI TCGA 1 cut(s) 188
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 2 cut(s) 259, 302
TseFI GTSAC 2 cut(s) 31, 151
TseI GCWGC 3 cut(s) 53, 101, 116
Tsp45I GTSAC 2 cut(s) 31, 151
TspDTI ATGAA 1 cut(s) 315
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.