Rmu_sc0002460.1_g000009

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002460.1
OG0000161
Physical Location & Seq
Reverse (-)
31160 .. 31675
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002460.1_g000009.1.cds

Sequence Viewer

Length: 516 bp
atgcctgatgcatttactgatatcgcaaaagtgacaagatcacatataccagctgcaaatatgcctgcaaggttagaagtccccaacaaggggcatagtgctgcagatagaggcgctgcaaccacacttagtgcaggtgtggttgaagccctggctccccaaaggaagagggggaggccacttggttcgattgacactcacccaaggaagaaaaggttgagtaaggcacaaactgacccatcaatcatcaatgttgagaatccctttcatgagattgtctctgattatagttatgtccatgaatcaatactggaggacactctgatgtttgaaatgattccagagaacaaagaaatctcaatggattatgagagtgtgtatgagttgatagaaagatcttccatacacattgatgatgtatttgcatacactgttgctcaagaaatcatagagcacgatgatatcgaaccacgctctgttgcagaatgtcaaccaagagaaaattggcctaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

171

Amino Acids

19.25

Weight (kDa)

5.13

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 125
AdeI CACNNNGTG 1 cut(s) 131
AfiI CCNNNNNNNGG 3 cut(s) 88, 89, 90
AgsI TTSAA 2 cut(s) 146, 332
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 1 cut(s) 283
AoxI GGCC 2 cut(s) 176, 506
ApeKI GCWGC 3 cut(s) 53, 101, 116
Asp700I GAANNNNTTC 1 cut(s) 336
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 3 cut(s) 40, 88, 103
BccI CCATC 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 283
BfmI CTRYAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 125
BglII AGATCT 1 cut(s) 395
BisI GCNGC 3 cut(s) 54, 102, 117
BlsI GCNGC 3 cut(s) 55, 103, 118
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 152
BplI GAGNNNNNCTC 2 cut(s) 263, 295
BpmI CTGGAG 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 150, 203
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 89, 90
Bse1I ACTGG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 150, 203
BseLI CCNNNNNNNGG 3 cut(s) 88, 89, 90
BseNI ACTGG 1 cut(s) 315
BseXI GCAGC 3 cut(s) 40, 88, 103
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 2 cut(s) 178, 508
BsiHKAI GWGCWC 1 cut(s) 456
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 88, 89, 90
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 2 cut(s) 178, 508
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 2 cut(s) 38, 395
BspANI GGCC 2 cut(s) 178, 508
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 2 cut(s) 150, 203
BssMI GATC 2 cut(s) 38, 395
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 433
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 128
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 2 cut(s) 41, 398
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 2 cut(s) 38, 395
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 3 cut(s) 40, 88, 103
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BsuRI GGCC 2 cut(s) 178, 508
BtsIMutI CAGTG 1 cut(s) 429
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 66
CciI TCATGA 1 cut(s) 268
CfoI GCGC 1 cut(s) 116
CviAII CATG 2 cut(s) 269, 299
CviJI RGCY 5 cut(s) 53, 149, 155, 178, 508
CviKI_1 RGCY 5 cut(s) 53, 149, 155, 178, 508
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 40, 397
DpnII GATC 2 cut(s) 38, 395
DraIII CACNNNGTG 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 203
Eco32I GATATC 2 cut(s) 22, 463
EcoRII CCWGG 1 cut(s) 150
EcoRV GATATC 2 cut(s) 22, 463
EcoT14I CCWWGG 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 2 cut(s) 272, 302
FaqI GGGAC 1 cut(s) 65
FatI CATG 2 cut(s) 268, 298
Fnu4HI GCNGC 3 cut(s) 54, 102, 117
Fsp4HI GCNGC 3 cut(s) 54, 102, 117
GlaI GCGC 1 cut(s) 115
GluI GCNGC 3 cut(s) 54, 102, 117
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 2 cut(s) 178, 508
HhaI GCGC 1 cut(s) 116
Hin1II CATG 2 cut(s) 272, 302
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 491
HindII GTYRAC 1 cut(s) 491
HinfI GANTC 3 cut(s) 259, 302, 337
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 2 cut(s) 283, 324
Hpy188III TCNNGA 3 cut(s) 269, 341, 440
Hpy8I GTNNAC 1 cut(s) 491
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4V TGCA 8 cut(s) 11, 56, 68, 104, 119, 134, 425, 482
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 2 cut(s) 272, 302
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 2 cut(s) 38, 395
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 8 cut(s) 18, 63, 78, 120, 137, 164, 296, 354
Lsp1109I GCAGC 3 cut(s) 40, 88, 103
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 40, 397
MboI GATC 2 cut(s) 38, 395
MboII GAAGA 3 cut(s) 178, 220, 390
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 1 cut(s) 502
MnlI CCTC 4 cut(s) 104, 162, 168, 307
Mph1103I ATGCAT 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 336
MslI CAYNNNNRTG 2 cut(s) 323, 411
MspA1I CMGCKG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
NdeII GATC 2 cut(s) 38, 395
NlaIII CATG 2 cut(s) 272, 302
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 13
PagI TCATGA 1 cut(s) 268
PaqCI CACCTGC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 3 cut(s) 259, 302, 337
PkrI GCNGC 3 cut(s) 55, 103, 118
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 156
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 395
PvuII CAGCTG 1 cut(s) 53
RseI CAYNNNNRTG 2 cut(s) 323, 411
SatI GCNGC 3 cut(s) 54, 102, 117
Sau3AI GATC 2 cut(s) 38, 395
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 456
SetI ASST 4 cut(s) 55, 74, 139, 218
SfcI CTRYAG 1 cut(s) 102
SmiMI CAYNNNNRTG 2 cut(s) 323, 411
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
Sse9I AATT 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 433
TaqI TCGA 2 cut(s) 188, 465
TasI AATT 1 cut(s) 502
TfiI GAWTC 3 cut(s) 259, 302, 337
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 3 cut(s) 53, 101, 116
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 257, 315
TspRI CASTG 1 cut(s) 436
XcmI CCANNNNNNNNNTGG 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.