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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 326 |
| AccB1I | GGYRCC | 1 cut(s) | 996 |
| AccII | CGCG | 1 cut(s) | 183 |
| AciI | CCGC | 2 cut(s) | 181, 183 |
| AclWI | GGATC | 1 cut(s) | 354 |
| AcoI | YGGCCR | 1 cut(s) | 411 |
| AcsI | RAATTY | 2 cut(s) | 516, 580 |
| AcuI | CTGAAG | 3 cut(s) | 92, 641, 1029 |
| AfaI | GTAC | 3 cut(s) | 674, 864, 1006 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 283, 1091 |
| AflIII | ACRYGT | 1 cut(s) | 160 |
| AjiI | CACGTC | 1 cut(s) | 163 |
| AluBI | AGCT | 4 cut(s) | 313, 884, 1105, 1114 |
| AluI | AGCT | 4 cut(s) | 313, 884, 1105, 1114 |
| Alw26I | GTCTC | 2 cut(s) | 208, 731 |
| AlwI | GGATC | 1 cut(s) | 354 |
| AoxI | GGCC | 1 cut(s) | 411 |
| ApoI | RAATTY | 2 cut(s) | 516, 580 |
| AseI | ATTAAT | 1 cut(s) | 893 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 143 |
| AspLEI | GCGC | 1 cut(s) | 327 |
| AsuHPI | GGTGA | 1 cut(s) | 1081 |
| BalI | TGGCCA | 1 cut(s) | 413 |
| BanI | GGYRCC | 1 cut(s) | 996 |
| BccI | CCATC | 1 cut(s) | 1184 |
| BciVI | GTATCC | 1 cut(s) | 150 |
| BclI | TGATCA | 2 cut(s) | 987, 1071 |
| BcoDI | GTCTC | 2 cut(s) | 208, 731 |
| BfaI | CTAG | 4 cut(s) | 857, 1002, 1053, 1106 |
| BfuI | GTATCC | 1 cut(s) | 150 |
| BmcAI | AGTACT | 2 cut(s) | 674, 1006 |
| BmgBI | CACGTC | 1 cut(s) | 163 |
| BmiI | GGNNCC | 2 cut(s) | 235, 998 |
| BmsI | GCATC | 1 cut(s) | 1042 |
| BpmI | CTGGAG | 1 cut(s) | 1000 |
| BsaBI | GATNNNNATC | 1 cut(s) | 266 |
| BsaJI | CCNNGG | 1 cut(s) | 181 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 283, 1091 |
| Bse1I | ACTGG | 1 cut(s) | 983 |
| Bse3DI | GCAATG | 1 cut(s) | 294 |
| Bse8I | GATNNNNATC | 1 cut(s) | 266 |
| BseDI | CCNNGG | 1 cut(s) | 181 |
| BseGI | GGATG | 1 cut(s) | 957 |
| BseJI | GATNNNNATC | 1 cut(s) | 266 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 283, 1091 |
| BseMI | GCAATG | 1 cut(s) | 294 |
| BseMII | CTCAG | 1 cut(s) | 1185 |
| BseNI | ACTGG | 1 cut(s) | 983 |
| Bsh1236I | CGCG | 1 cut(s) | 183 |
| BshFI | GGCC | 1 cut(s) | 413 |
| BshNI | GGYRCC | 1 cut(s) | 996 |
| BslFI | GGGAC | 3 cut(s) | 5, 149, 365 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 283, 1091 |
| BsmAI | GTCTC | 2 cut(s) | 208, 731 |
| BsmFI | GGGAC | 3 cut(s) | 5, 149, 365 |
| BsnI | GGCC | 1 cut(s) | 413 |
| Bsp143I | GATC | 3 cut(s) | 346, 987, 1071 |
| BspACI | CCGC | 2 cut(s) | 181, 183 |
| BspANI | GGCC | 1 cut(s) | 413 |
| BspCNI | CTCAG | 1 cut(s) | 1184 |
| BspFNI | CGCG | 1 cut(s) | 183 |
| BspHI | TCATGA | 1 cut(s) | 600 |
| BspLI | GGNNCC | 2 cut(s) | 235, 998 |
| BspPI | GGATC | 1 cut(s) | 354 |
| BspT107I | GGYRCC | 1 cut(s) | 996 |
| BsrDI | GCAATG | 1 cut(s) | 294 |
| BsrI | ACTGG | 1 cut(s) | 983 |
| BssECI | CCNNGG | 1 cut(s) | 181 |
| BssMI | GATC | 3 cut(s) | 346, 987, 1071 |
| Bst6I | CTCTTC | 2 cut(s) | 113, 276 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1039 |
| BstC8I | GCNNGC | 2 cut(s) | 323, 329 |
| BstDEI | CTNAG | 4 cut(s) | 665, 872, 902, 1171 |
| BstDSI | CCRYGG | 1 cut(s) | 181 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 281 |
| BstF5I | GGATG | 1 cut(s) | 957 |
| BstFNI | CGCG | 1 cut(s) | 183 |
| BstHHI | GCGC | 1 cut(s) | 327 |
| BstKTI | GATC | 3 cut(s) | 349, 990, 1074 |
| BstMAI | GTCTC | 2 cut(s) | 208, 731 |
| BstMBI | GATC | 3 cut(s) | 346, 987, 1071 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1039, 1111 |
| BstNSI | RCATGY | 2 cut(s) | 325, 331 |
| BstUI | CGCG | 1 cut(s) | 183 |
| BsuI | GTATCC | 1 cut(s) | 150 |
| BsuRI | GGCC | 1 cut(s) | 413 |
| BtgI | CCRYGG | 1 cut(s) | 181 |
| BtrI | CACGTC | 1 cut(s) | 163 |
| BtsCI | GGATG | 1 cut(s) | 957 |
| BtsIMutI | CAGTG | 1 cut(s) | 976 |
| Cac8I | GCNNGC | 2 cut(s) | 323, 329 |
| CciI | TCATGA | 1 cut(s) | 600 |
| CfoI | GCGC | 1 cut(s) | 327 |
| Cfr42I | CCGCGG | 1 cut(s) | 184 |
| Csp6I | GTAC | 3 cut(s) | 673, 863, 1005 |
| CviJI | RGCY | 9 cut(s) | 275, 313, 413, 647, 884, 958, 1105, 1114, 1175 |
| CviKI_1 | RGCY | 9 cut(s) | 275, 313, 413, 647, 884, 958, 1105, 1114, 1175 |
| CviQI | GTAC | 3 cut(s) | 673, 863, 1005 |
| DdeI | CTNAG | 4 cut(s) | 665, 872, 902, 1171 |
| DpnI | GATC | 3 cut(s) | 348, 989, 1073 |
| DpnII | GATC | 3 cut(s) | 346, 987, 1071 |
| EaeI | YGGCCR | 1 cut(s) | 411 |
| Eam1104I | CTCTTC | 2 cut(s) | 113, 276 |
| EarI | CTCTTC | 2 cut(s) | 113, 276 |
| Eco57I | CTGAAG | 3 cut(s) | 92, 641, 1029 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 281 |
| EcoRI | GAATTC | 1 cut(s) | 516 |
| EcoT22I | ATGCAT | 2 cut(s) | 212, 323 |
| FaqI | GGGAC | 3 cut(s) | 5, 149, 365 |
| FauNDI | CATATG | 2 cut(s) | 522, 796 |
| FbaI | TGATCA | 2 cut(s) | 987, 1071 |
| FokI | GGATG | 1 cut(s) | 964 |
| FspAI | RTGCGCAY | 1 cut(s) | 326 |
| FspBI | CTAG | 4 cut(s) | 857, 1002, 1053, 1106 |
| FspI | TGCGCA | 1 cut(s) | 326 |
| GlaI | GCGC | 1 cut(s) | 326 |
| GsuI | CTGGAG | 1 cut(s) | 1000 |
| HaeIII | GGCC | 1 cut(s) | 413 |
| HhaI | GCGC | 1 cut(s) | 327 |
| Hin6I | GCGC | 1 cut(s) | 325 |
| HinP1I | GCGC | 1 cut(s) | 325 |
| HincII | GTYRAC | 1 cut(s) | 399 |
| HindII | GTYRAC | 1 cut(s) | 399 |
| HindIII | AAGCTT | 3 cut(s) | 311, 882, 1112 |
| HinfI | GANTC | 7 cut(s) | 242, 626, 760, 1049, 1081, 1095, 1184 |
| HphI | GGTGA | 1 cut(s) | 1081 |
| Hpy166II | GTNNAC | 1 cut(s) | 399 |
| Hpy188I | TCNGA | 3 cut(s) | 1048, 1086, 1094 |
| Hpy188III | TCNNGA | 4 cut(s) | 601, 728, 857, 1099 |
| Hpy8I | GTNNAC | 1 cut(s) | 399 |
| Hpy99I | CGWCG | 1 cut(s) | 1134 |
| HpyAV | CCTTC | 6 cut(s) | 119, 616, 969, 1017, 1023, 1053 |
| HpyCH4IV | ACGT | 3 cut(s) | 162, 226, 455 |
| HpyCH4V | TGCA | 8 cut(s) | 210, 321, 331, 490, 715, 736, 922, 1146 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1039, 1111 |
| HpyF3I | CTNAG | 4 cut(s) | 665, 872, 902, 1171 |
| HpySE526I | ACGT | 3 cut(s) | 162, 226, 455 |
| HspAI | GCGC | 1 cut(s) | 325 |
| Ksp22I | TGATCA | 2 cut(s) | 987, 1071 |
| KspI | CCGCGG | 1 cut(s) | 184 |
| Kzo9I | GATC | 3 cut(s) | 346, 987, 1071 |
| LmnI | GCTCC | 2 cut(s) | 44, 561 |
| LpnPI | CCDG | 9 cut(s) | 36, 83, 180, 264, 632, 662, 934, 964, 1033 |
| LweI | GCATC | 1 cut(s) | 1042 |
| MaeI | CTAG | 4 cut(s) | 857, 1002, 1053, 1106 |
| MaeII | ACGT | 3 cut(s) | 162, 226, 455 |
| MaeIII | GTNAC | 1 cut(s) | 691 |
| MalI | GATC | 3 cut(s) | 348, 989, 1073 |
| MboI | GATC | 3 cut(s) | 346, 987, 1071 |
| MboII | GAAGA | 5 cut(s) | 130, 293, 652, 815, 817 |
| MlsI | TGGCCA | 1 cut(s) | 413 |
| MluNI | TGGCCA | 1 cut(s) | 413 |
| MlyI | GAGTC | 1 cut(s) | 236 |
| MnlI | CCTC | 4 cut(s) | 97, 114, 277, 966 |
| Mox20I | TGGCCA | 1 cut(s) | 413 |
| Mph1103I | ATGCAT | 2 cut(s) | 212, 323 |
| MroXI | GAANNNNTTC | 1 cut(s) | 143 |
| MscI | TGGCCA | 1 cut(s) | 413 |
| MseI | TTAA | 5 cut(s) | 264, 704, 893, 935, 1157 |
| MslI | CAYNNNNRTG | 5 cut(s) | 192, 326, 525, 873, 927 |
| Msp20I | TGGCCA | 1 cut(s) | 413 |
| MspA1I | CMGCKG | 1 cut(s) | 183 |
| MvnI | CGCG | 1 cut(s) | 183 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1039, 1111 |
| NdeI | CATATG | 2 cut(s) | 522, 796 |
| NdeII | GATC | 3 cut(s) | 346, 987, 1071 |
| NlaIV | GGNNCC | 2 cut(s) | 235, 998 |
| NsbI | TGCGCA | 1 cut(s) | 326 |
| NsiI | ATGCAT | 2 cut(s) | 212, 323 |
| NspI | RCATGY | 2 cut(s) | 325, 331 |
| PaeI | GCATGC | 2 cut(s) | 325, 331 |
| PagI | TCATGA | 1 cut(s) | 600 |
| PdmI | GAANNNNTTC | 1 cut(s) | 143 |
| PfeI | GAWTC | 6 cut(s) | 626, 760, 1049, 1081, 1095, 1184 |
| PleI | GAGTC | 1 cut(s) | 236 |
| PpsI | GAGTC | 1 cut(s) | 236 |
| PshBI | ATTAAT | 1 cut(s) | 893 |
| PspN4I | GGNNCC | 2 cut(s) | 235, 998 |
| RsaI | GTAC | 3 cut(s) | 674, 864, 1006 |
| RsaNI | GTAC | 3 cut(s) | 673, 863, 1005 |
| RseI | CAYNNNNRTG | 5 cut(s) | 192, 326, 525, 873, 927 |
| SacII | CCGCGG | 1 cut(s) | 184 |
| SaqAI | TTAA | 5 cut(s) | 264, 704, 893, 935, 1157 |
| Sau3AI | GATC | 3 cut(s) | 346, 987, 1071 |
| ScaI | AGTACT | 2 cut(s) | 674, 1006 |
| SchI | GAGTC | 1 cut(s) | 236 |
| SfaNI | GCATC | 1 cut(s) | 1042 |
| Sfr303I | CCGCGG | 1 cut(s) | 184 |
| SgrBI | CCGCGG | 1 cut(s) | 184 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 192, 326, 525, 873, 927 |
| SphI | GCATGC | 2 cut(s) | 325, 331 |
| SsiI | CCGC | 2 cut(s) | 181, 183 |
| SspI | AATATT | 1 cut(s) | 722 |
| SspMI | CTAG | 4 cut(s) | 857, 1002, 1053, 1106 |
| TaiI | ACGT | 3 cut(s) | 165, 229, 458 |
| TaqI | TCGA | 3 cut(s) | 729, 741, 1132 |
| TatI | WGTACW | 2 cut(s) | 672, 1004 |
| TfiI | GAWTC | 6 cut(s) | 626, 760, 1049, 1081, 1095, 1184 |
| Tru1I | TTAA | 5 cut(s) | 264, 704, 893, 935, 1157 |
| Tru9I | TTAA | 5 cut(s) | 264, 704, 893, 935, 1157 |
| TscAI | CASTG | 1 cut(s) | 983 |
| TspDTI | ATGAA | 9 cut(s) | 227, 321, 509, 539, 617, 618, 668, 968, 1112 |
| TspRI | CASTG | 1 cut(s) | 983 |
| VspI | ATTAAT | 1 cut(s) | 893 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 281 |
| XapI | RAATTY | 2 cut(s) | 516, 580 |
| XbaI | TCTAGA | 1 cut(s) | 856 |
| XceI | RCATGY | 2 cut(s) | 325, 331 |
| XmnI | GAANNNNTTC | 1 cut(s) | 143 |
| XspI | CTAG | 4 cut(s) | 857, 1002, 1053, 1106 |
| ZrmI | AGTACT | 2 cut(s) | 674, 1006 |
| Zsp2I | ATGCAT | 2 cut(s) | 212, 323 |