Rmu_sc0002460.1_g000043

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002460.1
OG0000161
Physical Location & Seq
Reverse (-)
180778 .. 181665
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002460.1_g000043.1.cds

Sequence Viewer

Length: 720 bp
atgggtcctcagagacgactaagtatttatgttggatacgaatccccaacaattatccgctacttggaacccttgacaggcgatctctttaccgctagatttgcggattgtcactttgatgagacagtcttcccgtcgttagggggagataggaaaaagaattttccaagggaacgaaagaaattgtcgtggtttgttctcactctatctcattttgatccccgcacttcacaaatgacgagatcacatataccagctgtaaatgtgcctgcaaggttagaagtccccaacaaggggtacggtgccgcagatagaggcactgcaaccgcacttagtggaggtgtggttgaggccgtggctccccaaggaagagggggaggccacttggttcgattgacactcacccaaggaagaagagggcgagacgctccgatgtttaaaatgattccagagaacaaagaaatttcaaaggattatgagagtgcggatgagttgatagaaagatcttccatacacattgatgatatatatactgttgctcaaggaatcatagagcacgatgatatcgaatcacgctctgttgcagaatgtcaacaaaaagcagatcggcctaaacggaaagaagcaatccaggcagaattagattctttgacaaagagacaggtatttggtcaggtagtgctaaccccaccaagtgtaaagcctataggacataaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

239

Amino Acids

26.66

Weight (kDa)

9.03

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AciI CCGC 7 cut(s) 58, 93, 104, 223, 306, 327, 485
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 2 cut(s) 160, 462
AdeI CACNNNGTG 2 cut(s) 335, 695
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 6 cut(s) 64, 77, 140, 292, 293, 294
AgsI TTSAA 1 cut(s) 468
AjnI CCWGG 1 cut(s) 630
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw21I GWGCWC 1 cut(s) 558
Alw26I GTCTC 4 cut(s) 7, 116, 417, 652
AlwI GGATC 1 cut(s) 212
AoxI GGCC 3 cut(s) 351, 379, 608
ApoI RAATTY 2 cut(s) 160, 462
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 1 cut(s) 394
AvaII GGWCC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 558
BceAI ACGGC 1 cut(s) 338
BciT130I CCWGG 1 cut(s) 632
BciVI GTATCC 1 cut(s) 29
BcoDI GTCTC 4 cut(s) 7, 116, 417, 652
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 705
BfuI GTATCC 1 cut(s) 29
BglII AGATCT 1 cut(s) 503
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 632
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 4 cut(s) 6, 69, 304, 360
BmrFI CCNGG 1 cut(s) 632
BpiI GAAGAC 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 525
BsaBI GATNNNNATC 1 cut(s) 40
BsaJI CCNNGG 4 cut(s) 167, 354, 364, 406
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 77, 140, 292, 293, 294
Bse8I GATNNNNATC 1 cut(s) 40
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 4 cut(s) 167, 354, 364, 406
BseGI GGATG 1 cut(s) 493
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 6 cut(s) 64, 77, 140, 292, 293, 294
BseMII CTCAG 1 cut(s) 23
BshFI GGCC 3 cut(s) 353, 381, 610
BshNI GGYRCC 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 558
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 6 cut(s) 64, 77, 140, 292, 293, 294
BsmAI GTCTC 4 cut(s) 7, 116, 417, 652
BsmBI CGTCTC 2 cut(s) 7, 417
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 3 cut(s) 353, 381, 610
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 5 cut(s) 82, 217, 242, 503, 604
BspACI CCGC 7 cut(s) 58, 93, 104, 223, 306, 327, 485
BspANI GGCC 3 cut(s) 353, 381, 610
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 4 cut(s) 6, 69, 304, 360
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 302
BssECI CCNNGG 4 cut(s) 167, 354, 364, 406
BssMI GATC 5 cut(s) 82, 217, 242, 503, 604
BssT1I CCWWGG 3 cut(s) 167, 364, 406
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 3 cut(s) 127, 302, 535
Bst6I CTCTTC 2 cut(s) 364, 409
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 3 cut(s) 9, 20, 332
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 493
BstKTI GATC 5 cut(s) 85, 220, 245, 506, 607
BstMAI GTCTC 4 cut(s) 7, 116, 417, 652
BstMBI GATC 5 cut(s) 82, 217, 242, 503, 604
BstMWI GCNNNNNNNGC 2 cut(s) 101, 632
BstNI CCWGG 1 cut(s) 632
BstSCI CCNGG 1 cut(s) 630
BstSFI CTRYAG 1 cut(s) 705
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 3 cut(s) 353, 381, 610
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 1 cut(s) 493
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 298
CviJI RGCY 6 cut(s) 257, 353, 359, 381, 610, 703
CviKI_1 RGCY 6 cut(s) 257, 353, 359, 381, 610, 703
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 3 cut(s) 9, 20, 332
DpnI GATC 5 cut(s) 84, 219, 244, 505, 606
DpnII GATC 5 cut(s) 82, 217, 242, 503, 604
DraI TTTAAA 1 cut(s) 439
DraIII CACNNNGTG 2 cut(s) 335, 695
Eam1104I CTCTTC 2 cut(s) 364, 409
EarI CTCTTC 2 cut(s) 364, 409
Eco130I CCWWGG 3 cut(s) 167, 364, 406
Eco32I GATATC 1 cut(s) 565
Eco47I GGWCC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 630
EcoRV GATATC 1 cut(s) 565
EcoT14I CCWWGG 3 cut(s) 167, 364, 406
ErhI CCWWGG 3 cut(s) 167, 364, 406
Esp3I CGTCTC 2 cut(s) 7, 417
FaqI GGGAC 1 cut(s) 269
FauI CCCGC 1 cut(s) 230
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 3 cut(s) 353, 381, 610
HgaI GACGC 1 cut(s) 434
HincII GTYRAC 1 cut(s) 593
HindII GTYRAC 1 cut(s) 593
HinfI GANTC 5 cut(s) 41, 445, 546, 569, 644
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 593
Hpy188I TCNGA 2 cut(s) 12, 432
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 1 cut(s) 593
Hpy99I CGWCG 1 cut(s) 139
HpyCH4III ACNGT 3 cut(s) 127, 302, 535
HpyCH4V TGCA 3 cut(s) 272, 323, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 632
HpyF3I CTNAG 3 cut(s) 9, 20, 332
Kzo9I GATC 5 cut(s) 82, 217, 242, 503, 604
LmnI GCTCC 2 cut(s) 364, 433
LpnPI CCDG 8 cut(s) 63, 267, 282, 462, 617, 644, 647, 659
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 110
MalI GATC 5 cut(s) 84, 219, 244, 505, 606
MboI GATC 5 cut(s) 82, 217, 242, 503, 604
MboII GAAGA 5 cut(s) 121, 381, 423, 426, 498
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 5 cut(s) 51, 160, 182, 462, 638
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 7 cut(s) 18, 308, 332, 343, 365, 371, 410
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 2 cut(s) 117, 519
MspA1I CMGCKG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 632
MvaI CCWGG 1 cut(s) 632
MwoI GCNNNNNNNGC 2 cut(s) 101, 632
NdeII GATC 5 cut(s) 82, 217, 242, 503, 604
NlaIV GGNNCC 4 cut(s) 6, 69, 304, 360
NmuCI GTSAC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PfeI GAWTC 5 cut(s) 41, 445, 546, 569, 644
PkrI GCNGC 1 cut(s) 307
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 4 cut(s) 6, 69, 304, 360
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PsuI RGATCY 1 cut(s) 503
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 2 cut(s) 117, 519
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 5 cut(s) 82, 217, 242, 503, 604
Sau96I GGNCC 1 cut(s) 5
ScrFI CCNGG 1 cut(s) 632
SduI GDGCHC 1 cut(s) 558
SetI ASST 5 cut(s) 259, 278, 343, 666, 678
SfcI CTRYAG 1 cut(s) 705
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 2 cut(s) 117, 519
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
Sse9I AATT 5 cut(s) 51, 160, 182, 462, 638
SsiI CCGC 7 cut(s) 58, 93, 104, 223, 306, 327, 485
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 630
StyI CCWWGG 3 cut(s) 167, 364, 406
TaaI ACNGT 3 cut(s) 127, 302, 535
TaqI TCGA 2 cut(s) 391, 567
TasI AATT 5 cut(s) 51, 160, 182, 462, 638
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 5 cut(s) 41, 445, 546, 569, 644
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 631
TspRI CASTG 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 2 cut(s) 160, 462
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.