Rmu_sc0011563.1_g000005

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011563.1
OG0000161
Physical Location & Seq
Reverse (-)
9966 .. 10707
742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011563.1_g000005.1.cds

Sequence Viewer

Length: 498 bp
atggtattggttgatgcgtcgacacgctggtcacatgttgcactgttgtccactcgaaatgctgcttatgctaaattcctcgcccagattatccgtctacgggctcactacccagatcatcctattaagtcgattcgacttgataatgctgggggactagtgactgggtacgagccaaatatctcgcacttacgcatctttgggtgtgccatttatgtgcctattacgcagccacagtgtactaagattggtccacaacgacgaatgagcatatacgttggatatgaatctccaaccatcgtccgctaccttgaacccttgacaagcgatctgtttaccgctagatttgtggattgtcactttgatgagacagtcttcccatcgttagggggagaaaagaacacatatgttcaacaggaacgacatgaattgtcgtggtctgtccccactatgtctcatctcgatccccgtaccgcacagtccaaacttgaagtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

165

Amino Acids

18.73

Weight (kDa)

8.47

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AccI GTMKAC 2 cut(s) 20, 97
AciI CCGC 3 cut(s) 304, 339, 474
AclWI GGATC 1 cut(s) 458
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 3 cut(s) 170, 241, 472
AfiI CCNNNNNNNGG 2 cut(s) 100, 386
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 3 cut(s) 314, 413, 491
AhlI ACTAGT 1 cut(s) 157
Alw26I GTCTC 2 cut(s) 362, 459
AlwI GGATC 1 cut(s) 458
ApeKI GCWGC 2 cut(s) 62, 229
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 367
BbvI GCAGC 2 cut(s) 49, 241
BccI CCATC 2 cut(s) 305, 388
BcoDI GTCTC 2 cut(s) 362, 459
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 2 cut(s) 158, 342
BisI GCNGC 2 cut(s) 63, 230
BlsI GCNGC 2 cut(s) 64, 231
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 4, 204
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 286
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 386
Bse1I ACTGG 1 cut(s) 169
Bse8I GATNNNNATC 1 cut(s) 286
BseGI GGATG 1 cut(s) 118
BseJI GATNNNNATC 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 100, 386
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 2 cut(s) 49, 241
BseYI CCCAGC 1 cut(s) 149
BslFI GGGAC 2 cut(s) 168, 428
BslI CCNNNNNNNGG 2 cut(s) 100, 386
BsmAI GTCTC 2 cut(s) 362, 459
BsmFI GGGAC 2 cut(s) 168, 428
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 3 cut(s) 115, 328, 463
BspACI CCGC 3 cut(s) 304, 339, 474
BspPI GGATC 1 cut(s) 458
BsrI ACTGG 1 cut(s) 169
BssMI GATC 3 cut(s) 115, 328, 463
Bst4CI ACNGT 4 cut(s) 45, 237, 373, 480
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 3 cut(s) 118, 331, 466
BstMAI GTCTC 2 cut(s) 362, 459
BstMBI GATC 3 cut(s) 115, 328, 463
BstMWI GCNNNNNNNGC 2 cut(s) 68, 226
BstNSI RCATGY 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 49, 241
BstV2I GAAGAC 1 cut(s) 367
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 41, 242
Cfr13I GGNCC 1 cut(s) 251
CseI GACGC 1 cut(s) 6
Csp6I GTAC 3 cut(s) 169, 240, 471
CviAII CATG 2 cut(s) 35, 425
CviJI RGCY 3 cut(s) 104, 175, 232
CviKI_1 RGCY 3 cut(s) 104, 175, 232
CviQI GTAC 3 cut(s) 169, 240, 471
DdeI CTNAG 1 cut(s) 243
DpnI GATC 3 cut(s) 117, 330, 465
DpnII GATC 3 cut(s) 115, 328, 463
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 2 cut(s) 38, 428
FaqI GGGAC 2 cut(s) 168, 428
FatI CATG 2 cut(s) 34, 424
FauNDI CATATG 1 cut(s) 406
FblI GTMKAC 2 cut(s) 20, 97
Fnu4HI GCNGC 2 cut(s) 63, 230
FokI GGATG 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 63, 230
FspBI CTAG 2 cut(s) 158, 342
GluI GCNGC 2 cut(s) 63, 230
GsaI CCCAGC 1 cut(s) 153
HgaI GACGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 38, 428
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 2 cut(s) 133, 287
Hpy166II GTNNAC 6 cut(s) 21, 51, 98, 240, 254, 336
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 6 cut(s) 21, 51, 98, 240, 254, 336
Hpy99I CGWCG 2 cut(s) 22, 264
HpyCH4III ACNGT 4 cut(s) 45, 237, 373, 480
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 226
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 2 cut(s) 38, 428
Kzo9I GATC 3 cut(s) 115, 328, 463
LpnPI CCDG 6 cut(s) 13, 98, 126, 135, 150, 401
Lsp1109I GCAGC 2 cut(s) 49, 241
LweI GCATC 2 cut(s) 4, 204
MaeI CTAG 2 cut(s) 158, 342
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 3 cut(s) 30, 160, 356
MalI GATC 3 cut(s) 117, 330, 465
MboI GATC 3 cut(s) 115, 328, 463
MboII GAAGA 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 2 cut(s) 74, 428
MmeI TCCRAC 2 cut(s) 259, 317
MnlI CCTC 1 cut(s) 89
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 215, 363
MwoI GCNNNNNNNGC 2 cut(s) 68, 226
NdeI CATATG 1 cut(s) 406
NdeII GATC 3 cut(s) 115, 328, 463
NlaIII CATG 2 cut(s) 38, 428
NmuCI GTSAC 3 cut(s) 30, 160, 356
NspI RCATGY 1 cut(s) 38
PciI ACATGT 1 cut(s) 34
PfeI GAWTC 2 cut(s) 133, 287
PkrI GCNGC 2 cut(s) 64, 231
PscI ACATGT 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 251
RsaI GTAC 3 cut(s) 170, 241, 472
RsaNI GTAC 3 cut(s) 169, 240, 471
RseI CAYNNNNRTG 2 cut(s) 215, 363
SalI GTCGAC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 63, 230
Sau3AI GATC 3 cut(s) 115, 328, 463
Sau96I GGNCC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 106
SetI ASST 2 cut(s) 279, 312
SfaNI GCATC 2 cut(s) 4, 204
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 2 cut(s) 215, 363
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 2 cut(s) 74, 428
SsiI CCGC 3 cut(s) 304, 339, 474
SspMI CTAG 2 cut(s) 158, 342
TaaI ACNGT 4 cut(s) 45, 237, 373, 480
TaiI ACGT 1 cut(s) 279
TaqI TCGA 5 cut(s) 20, 55, 131, 136, 462
TasI AATT 2 cut(s) 74, 428
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 2 cut(s) 133, 287
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 2 cut(s) 48, 242
TseFI GTSAC 3 cut(s) 30, 160, 356
TseI GCWGC 2 cut(s) 62, 229
Tsp45I GTSAC 3 cut(s) 30, 160, 356
TspDTI ATGAA 2 cut(s) 300, 441
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 2 cut(s) 48, 242
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 38
XmiI GTMKAC 2 cut(s) 20, 97
XspI CTAG 2 cut(s) 158, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.