Rw1G010800

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
24419324 .. 24420654
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010800.1

Sequence Viewer

Length: 543 bp
ATGATATTTATAGGGTTAAATTATATGTTTGCTTTGAGCGTATCAGGAGATAGGAAAAAGGATTTTCTAAGGGAACGACAGGAATTGTCGTGGTTTGTCCCCACTCTGTCTCATTTTGATCCCCGCACTTCACAATGTGAAAGTGAAGTGAAAAGAATAATCGATCTTCAGAACGTAACAGATTCGATGCCTGATGCGTTTACTGATGTCACAAAAGTGACGAGAACACATATACCAGCTGCAAATGTGCCTACAAGGTTAGAAGTCCCCAACAAAGGGCACGGTGTTGCAGATAGAGGCACTACAACCATACTTGTTGGAGGTGTGGTTGAGGCTGTGGCTCCCCAAAAGAAGAGGGGGAGACCACTTGGTTCAATTGACACTCACTCAAGGAAGAAGAGGGGGAGTAAGGCACAAACCGATCCACTAATCATCAATGTAGAGAATCCCTCTCATGAGATTGTCTTTGATTACAGTTTGGGGCTAACTTTGATTTTTTTTTTTTTTTTTGATAAATTTCGAGGGAAATTAATTTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

180

Amino Acids

20.32

Weight (kDa)

9.3

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 124
AclWI GGATC 2 cut(s) 113, 416
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 152
AdeI CACNNNGTG 1 cut(s) 137
AfiI CCNNNNNNNGG 2 cut(s) 275, 276
AgsI TTSAA 2 cut(s) 375, 539
AleI CACNNNNGTG 1 cut(s) 215
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw26I GTCTC 2 cut(s) 114, 355
AlwI GGATC 2 cut(s) 113, 416
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 515
AseI ATTAAT 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 114, 355
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 342
BmsI GCATC 2 cut(s) 177, 184
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpuEI CTTGAG 1 cut(s) 373
Bsa29I ATCGAT 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 276
BseCI ATCGAT 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 275, 276
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 1 cut(s) 226
BshVI ATCGAT 1 cut(s) 162
BslFI GGGAC 2 cut(s) 83, 251
BslI CCNNNNNNNGG 2 cut(s) 275, 276
BsmAI GTCTC 2 cut(s) 114, 355
BsmFI GGGAC 2 cut(s) 83, 251
Bso31I GGTCTC 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 118, 163, 421
BspACI CCGC 1 cut(s) 124
BspDI ATCGAT 1 cut(s) 162
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 342
BspPI GGATC 2 cut(s) 113, 416
BspTNI GGTCTC 1 cut(s) 355
BssMI GATC 3 cut(s) 118, 163, 421
Bst4CI ACNGT 2 cut(s) 284, 476
Bst6I CTCTTC 2 cut(s) 347, 392
BstDEI CTNAG 1 cut(s) 68
BstKTI GATC 3 cut(s) 121, 166, 424
BstMAI GTCTC 2 cut(s) 114, 355
BstMBI GATC 3 cut(s) 118, 163, 421
BstSLI GKGCMC 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 162
BsuTUI ATCGAT 1 cut(s) 162
CciI TCATGA 1 cut(s) 454
ClaI ATCGAT 1 cut(s) 162
CviAII CATG 1 cut(s) 455
CviJI RGCY 4 cut(s) 239, 335, 341, 484
CviKI_1 RGCY 4 cut(s) 239, 335, 341, 484
DdeI CTNAG 1 cut(s) 68
DpnI GATC 3 cut(s) 120, 165, 423
DpnII GATC 3 cut(s) 118, 163, 421
DraIII CACNNNGTG 1 cut(s) 137
Eam1104I CTCTTC 2 cut(s) 347, 392
EarI CTCTTC 2 cut(s) 347, 392
Eco31I GGTCTC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 152
FaeI CATG 1 cut(s) 458
FaiI YATR 7 cut(s) 11, 24, 26, 231, 233, 311, 456
FaqI GGGAC 2 cut(s) 83, 251
FatI CATG 1 cut(s) 454
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 458
HinfI GANTC 2 cut(s) 182, 445
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 2 cut(s) 45, 455
Hpy8I GTNNAC 1 cut(s) 201
HpyCH4III ACNGT 2 cut(s) 284, 476
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 242, 290
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 1 cut(s) 458
Kzo9I GATC 3 cut(s) 118, 163, 421
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 4 cut(s) 30, 65, 204, 249
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 2 cut(s) 177, 184
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 3 cut(s) 175, 208, 217
MalI GATC 3 cut(s) 120, 165, 423
MboI GATC 3 cut(s) 118, 163, 421
MboII GAAGA 4 cut(s) 158, 364, 406, 409
MfeI CAATTG 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 6 cut(s) 19, 83, 375, 515, 527, 531
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 7 cut(s) 290, 314, 325, 348, 393, 460, 515
MseI TTAA 2 cut(s) 17, 530
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 239
MunI CAATTG 1 cut(s) 375
NdeII GATC 3 cut(s) 118, 163, 421
NlaIII CATG 1 cut(s) 458
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 2 cut(s) 208, 217
OliI CACNNNNGTG 1 cut(s) 215
PagI TCATGA 1 cut(s) 454
PfeI GAWTC 2 cut(s) 182, 445
PkrI GCNGC 1 cut(s) 241
PshBI ATTAAT 1 cut(s) 530
PspN4I GGNNCC 1 cut(s) 342
PvuII CAGCTG 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 2 cut(s) 17, 530
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 3 cut(s) 118, 163, 421
SduI GDGCHC 1 cut(s) 282
SetI ASST 4 cut(s) 177, 241, 260, 325
SfaNI GCATC 2 cut(s) 177, 184
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 6 cut(s) 19, 83, 375, 515, 527, 531
SsiI CCGC 1 cut(s) 124
TaaI ACNGT 2 cut(s) 284, 476
TaiI ACGT 1 cut(s) 177
TaqI TCGA 3 cut(s) 162, 185, 520
TasI AATT 6 cut(s) 19, 83, 375, 515, 527, 531
TfiI GAWTC 2 cut(s) 182, 445
Tru1I TTAA 2 cut(s) 17, 530
Tru9I TTAA 2 cut(s) 17, 530
TseFI GTSAC 2 cut(s) 208, 217
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 2 cut(s) 208, 217
VspI ATTAAT 1 cut(s) 530
XapI RAATTY 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.