Rmu_sc0001605.1_g000009

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001605.1
Physical Location & Seq
Forward (+)
24468 .. 25037
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001605.1_g000009.1.cds

Sequence Viewer

Length: 570 bp
atgatttaccaagggaacgacaggaattgccatggtttgtccccactctgtctcattttgatccccacacttcacaaagtgaaaagaataatcgatcttcagaatatagcagattcgatgcctgatatgtttactgatatcacaaaagtgatgagatcacatataccagctgcaaatgtgcttgcaaggttagaagtccccaacaaggggcacggtgtcgtagacagaggcattgcaaccacacttagtggaggtgtggttgaggccgtggctccccaaaggaagagggggaggccacttgattcgattgacactcacccaaggaagaagagggtgagtaaggcacaaaccgatccattaatcatcaatgtagagaatctctctcatgagattgtctctgattacaattatgtccatgaatcaatactggaggacgctccgatgtttgaaatgattccagagaacaaagaaatctcaaaggattatgagagtgcgtatgagttgatagaaagatcttccatacacattgatgatatatactgtggctcaaggagtcatagaacacgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

189

Amino Acids

21.33

Weight (kDa)

6.5

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 222
AclWI GGATC 2 cut(s) 55, 347
AcuI CTGAAG 1 cut(s) 83
AdeI CACNNNGTG 2 cut(s) 79, 248
AfiI CCNNNNNNNGG 3 cut(s) 205, 206, 207
AgsI TTSAA 1 cut(s) 449
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw26I GTCTC 2 cut(s) 56, 400
AlwI GGATC 2 cut(s) 55, 347
AoxI GGCC 2 cut(s) 264, 293
ApeKI GCWGC 1 cut(s) 170
AseI ATTAAT 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 453
AsuHPI GGTGA 2 cut(s) 308, 346
BaeGI GKGCMC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 157
BceAI ACGGC 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 56, 400
BglII AGATCT 1 cut(s) 512
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 273
BmsI GCATC 1 cut(s) 108
BplI GAGNNNNNCTC 4 cut(s) 365, 397, 380, 412
BpmI CTGGAG 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 532
Bsa29I ATCGAT 1 cut(s) 93
BsaJI CCNNGG 4 cut(s) 10, 31, 267, 320
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 206, 207
Bse1I ACTGG 1 cut(s) 432
Bse3DI GCAATG 1 cut(s) 231
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 4 cut(s) 10, 31, 267, 320
BseLI CCNNNNNNNGG 3 cut(s) 205, 206, 207
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 432
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 1 cut(s) 157
BshFI GGCC 2 cut(s) 266, 295
BshVI ATCGAT 1 cut(s) 93
BslFI GGGAC 2 cut(s) 25, 182
BslI CCNNNNNNNGG 3 cut(s) 205, 206, 207
BsmAI GTCTC 2 cut(s) 56, 400
BsmFI GGGAC 2 cut(s) 25, 182
BsnI GGCC 2 cut(s) 266, 295
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 5 cut(s) 60, 94, 155, 352, 512
Bsp19I CCATGG 1 cut(s) 31
BspANI GGCC 2 cut(s) 266, 295
BspDI ATCGAT 1 cut(s) 93
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 2 cut(s) 55, 347
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 432
BssECI CCNNGG 4 cut(s) 10, 31, 267, 320
BssMI GATC 5 cut(s) 60, 94, 155, 352, 512
BssT1I CCWWGG 3 cut(s) 10, 31, 320
Bst4CI ACNGT 2 cut(s) 215, 542
Bst6I CTCTTC 2 cut(s) 278, 323
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 2 cut(s) 31, 267
BstKTI GATC 5 cut(s) 63, 97, 158, 355, 515
BstMAI GTCTC 2 cut(s) 56, 400
BstMBI GATC 5 cut(s) 60, 94, 155, 352, 512
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 2 cut(s) 266, 295
BsuTUI ATCGAT 1 cut(s) 93
BtgI CCRYGG 2 cut(s) 31, 267
Cac8I GCNNGC 1 cut(s) 183
CciI TCATGA 1 cut(s) 385
ClaI ATCGAT 1 cut(s) 93
CseI GACGC 1 cut(s) 443
CviAII CATG 3 cut(s) 32, 386, 416
CviJI RGCY 5 cut(s) 170, 266, 272, 295, 546
CviKI_1 RGCY 5 cut(s) 170, 266, 272, 295, 546
DdeI CTNAG 1 cut(s) 245
DpnI GATC 5 cut(s) 62, 96, 157, 354, 514
DpnII GATC 5 cut(s) 60, 94, 155, 352, 512
DraIII CACNNNGTG 2 cut(s) 79, 248
Eam1104I CTCTTC 2 cut(s) 278, 323
EarI CTCTTC 2 cut(s) 278, 323
Eco130I CCWWGG 3 cut(s) 10, 31, 320
Eco32I GATATC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 83
EcoRV GATATC 1 cut(s) 139
EcoT14I CCWWGG 3 cut(s) 10, 31, 320
ErhI CCWWGG 3 cut(s) 10, 31, 320
FaeI CATG 3 cut(s) 35, 389, 419
FaqI GGGAC 2 cut(s) 25, 182
FatI CATG 3 cut(s) 31, 385, 415
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 2 cut(s) 266, 295
HgaI GACGC 1 cut(s) 443
Hin1II CATG 3 cut(s) 35, 389, 419
HinfI GANTC 6 cut(s) 113, 302, 376, 419, 454, 553
HphI GGTGA 2 cut(s) 308, 346
Hpy166II GTNNAC 2 cut(s) 132, 223
Hpy188I TCNGA 3 cut(s) 102, 400, 441
Hpy188III TCNNGA 2 cut(s) 386, 458
Hpy8I GTNNAC 2 cut(s) 132, 223
HpyCH4III ACNGT 2 cut(s) 215, 542
HpyCH4V TGCA 3 cut(s) 173, 185, 236
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 3 cut(s) 35, 389, 419
Kzo9I GATC 5 cut(s) 60, 94, 155, 352, 512
LmnI GCTCC 2 cut(s) 277, 442
LpnPI CCDG 5 cut(s) 7, 135, 180, 413, 471
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 108
MalI GATC 5 cut(s) 62, 96, 157, 354, 514
MboI GATC 5 cut(s) 60, 94, 155, 352, 512
MboII GAAGA 5 cut(s) 89, 295, 337, 340, 507
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 2 cut(s) 25, 406
MlyI GAGTC 1 cut(s) 562
MnlI CCTC 7 cut(s) 221, 245, 256, 279, 285, 324, 424
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 2 cut(s) 146, 528
MspA1I CMGCKG 1 cut(s) 170
NcoI CCATGG 1 cut(s) 31
NdeII GATC 5 cut(s) 60, 94, 155, 352, 512
NlaIII CATG 3 cut(s) 35, 389, 419
NlaIV GGNNCC 1 cut(s) 273
OliI CACNNNNGTG 1 cut(s) 146
PagI TCATGA 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 5 cut(s) 113, 302, 376, 419, 454
PkrI GCNGC 1 cut(s) 172
PleI GAGTC 1 cut(s) 561
PpsI GAGTC 1 cut(s) 561
PshBI ATTAAT 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 512
PvuII CAGCTG 1 cut(s) 170
RseI CAYNNNNRTG 2 cut(s) 146, 528
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 5 cut(s) 60, 94, 155, 352, 512
SchI GAGTC 1 cut(s) 562
SduI GDGCHC 1 cut(s) 213
SetI ASST 3 cut(s) 172, 191, 256
SfaNI GCATC 1 cut(s) 108
SmiMI CAYNNNNRTG 2 cut(s) 146, 528
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
Sse9I AATT 2 cut(s) 25, 406
StyI CCWWGG 3 cut(s) 10, 31, 320
TaaI ACNGT 2 cut(s) 215, 542
TaqI TCGA 3 cut(s) 93, 116, 305
TasI AATT 2 cut(s) 25, 406
TfiI GAWTC 5 cut(s) 113, 302, 376, 419, 454
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 432
VspI ATTAAT 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.