Rmu_sc0003385.1_g000019

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003385.1
OG0000161
Physical Location & Seq
Reverse (-)
74125 .. 76920
2796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003385.1_g000019.1.cds

Sequence Viewer

Length: 564 bp
atgcctgatgcatttactgatatcgtaaaagtgacgagatcacatataccaactgcaaatgtgcctgcaaggttagaagtccccaacaaggggaacggtgccgcagatagaggcactacaaccacacttagtggaggtgtggttgaggccgtggctccccaaaggaagagggggaggccacttggttcgattgacactcacccaagaaagaagagggtgagtaaggcacaaaacgatccattaatcatcaatgtagagaatccctctcatgagaatgtttatgattatagttatgtccatgaatcaatactggaggaggctccaatgtttaaaattattctagagaataaagaaatctcaaaggattatgagactccacaggtgaaatcgttgcaggccgcttggagggaagaatctatggcctctgggctagaaaagccctcaaataactcgagctatggtggccggagttgggagaaccaaggtcggcgattttgggtgattttagcttggcggagcaacttcccggggttgcaacggcctccacagtgcttcccatgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

187

Amino Acids

20.96

Weight (kDa)

9.12

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 3 cut(s) 102, 399, 514
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 463
AdeI CACNNNGTG 1 cut(s) 131
AfiI CCNNNNNNNGG 5 cut(s) 88, 89, 90, 405, 472
AluBI AGCT 2 cut(s) 456, 509
AluI AGCT 2 cut(s) 456, 509
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 1 cut(s) 230
Ama87I CYCGRG 2 cut(s) 451, 526
AoxI GGCC 6 cut(s) 147, 176, 396, 420, 463, 539
AseI ATTAAT 1 cut(s) 242
AsuC2I CCSGG 2 cut(s) 527, 528
AsuHPI GGTGA 4 cut(s) 191, 229, 394, 511
AvaI CYCGRG 2 cut(s) 451, 526
BanI GGYRCC 1 cut(s) 98
BceAI ACGGC 2 cut(s) 134, 554
BcnI CCSGG 2 cut(s) 527, 528
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 2 cut(s) 341, 431
BisI GCNGC 2 cut(s) 102, 399
BlsI GCNGC 2 cut(s) 103, 400
Bme1390I CCNGG 2 cut(s) 527, 528
BmeT110I CYCGRG 2 cut(s) 451, 526
BmiI GGNNCC 3 cut(s) 100, 156, 321
BmrFI CCNGG 2 cut(s) 527, 528
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 527, 528
BsaJI CCNNGG 4 cut(s) 150, 481, 526, 527
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 89, 90, 405, 472
Bse1I ACTGG 1 cut(s) 315
BseDI CCNNGG 4 cut(s) 150, 481, 526, 527
BseLI CCNNNNNNNGG 5 cut(s) 88, 89, 90, 405, 472
BseNI ACTGG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 329
BshFI GGCC 6 cut(s) 149, 178, 398, 422, 465, 541
BshNI GGYRCC 1 cut(s) 98
BsiHKCI CYCGRG 2 cut(s) 451, 526
BsiSI CCGG 2 cut(s) 466, 527
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 5 cut(s) 88, 89, 90, 405, 472
BsmAI GTCTC 1 cut(s) 365
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 6 cut(s) 149, 178, 398, 422, 465, 541
BsoBI CYCGRG 2 cut(s) 451, 526
Bsp143I GATC 2 cut(s) 38, 235
BspACI CCGC 3 cut(s) 102, 399, 514
BspANI GGCC 6 cut(s) 149, 178, 398, 422, 465, 541
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 3 cut(s) 100, 156, 321
BspPI GGATC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 4 cut(s) 150, 481, 526, 527
BssMI GATC 2 cut(s) 38, 235
BssT1I CCWWGG 1 cut(s) 481
Bst4CI ACNGT 2 cut(s) 98, 549
Bst6I CTCTTC 2 cut(s) 161, 206
BstC8I GCNNGC 2 cut(s) 66, 396
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 150
BstKTI GATC 2 cut(s) 41, 238
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 2 cut(s) 38, 235
BstMWI GCNNNNNNNGC 3 cut(s) 436, 462, 558
BstSCI CCNGG 2 cut(s) 525, 526
BsuRI GGCC 6 cut(s) 149, 178, 398, 422, 465, 541
BtgI CCRYGG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 554
Cac8I GCNNGC 2 cut(s) 66, 396
CciI TCATGA 1 cut(s) 268
Cfr9I CCCGGG 1 cut(s) 526
CviAII CATG 3 cut(s) 269, 299, 558
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 40, 237
DpnII GATC 2 cut(s) 38, 235
DraI TTTAAA 1 cut(s) 331
DraIII CACNNNGTG 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 463
Eam1104I CTCTTC 2 cut(s) 161, 206
EarI CTCTTC 2 cut(s) 161, 206
EciI GGCGGA 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 481
Eco32I GATATC 1 cut(s) 22
Eco88I CYCGRG 2 cut(s) 451, 526
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 481
EcoT22I ATGCAT 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 3 cut(s) 272, 302, 561
FaqI GGGAC 1 cut(s) 65
FatI CATG 3 cut(s) 268, 298, 557
Fnu4HI GCNGC 2 cut(s) 102, 399
Fsp4HI GCNGC 2 cut(s) 102, 399
FspBI CTAG 2 cut(s) 341, 431
GluI GCNGC 2 cut(s) 102, 399
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 6 cut(s) 149, 178, 398, 422, 465, 541
HapII CCGG 2 cut(s) 466, 527
Hin1II CATG 3 cut(s) 272, 302, 561
HinfI GANTC 4 cut(s) 259, 302, 373, 413
HpaII CCGG 2 cut(s) 466, 527
HphI GGTGA 4 cut(s) 191, 229, 394, 511
Hpy188III TCNNGA 2 cut(s) 269, 341
HpyCH4III ACNGT 2 cut(s) 98, 549
HpyCH4V TGCA 5 cut(s) 11, 56, 68, 394, 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 436, 462, 558
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 3 cut(s) 272, 302, 561
Kzo9I GATC 2 cut(s) 38, 235
LmnI GCTCC 3 cut(s) 160, 325, 516
LpnPI CCDG 8 cut(s) 18, 78, 296, 365, 380, 411, 479, 540
MaeI CTAG 2 cut(s) 341, 431
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 40, 237
MboI GATC 2 cut(s) 38, 235
MboII GAAGA 3 cut(s) 178, 223, 422
MluCI AATT 1 cut(s) 333
MlyI GAGTC 1 cut(s) 367
Mph1103I ATGCAT 1 cut(s) 13
MseI TTAA 2 cut(s) 242, 330
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 2 cut(s) 466, 527
MspR9I CCNGG 2 cut(s) 527, 528
MwoI GCNNNNNNNGC 3 cut(s) 436, 462, 558
NciI CCSGG 2 cut(s) 527, 528
NdeII GATC 2 cut(s) 38, 235
NlaIII CATG 3 cut(s) 272, 302, 561
NlaIV GGNNCC 3 cut(s) 100, 156, 321
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 13
PaeR7I CTCGAG 1 cut(s) 451
PagI TCATGA 1 cut(s) 268
PfeI GAWTC 3 cut(s) 259, 302, 413
PkrI GCNGC 2 cut(s) 103, 400
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PshBI ATTAAT 1 cut(s) 242
PspN4I GGNNCC 3 cut(s) 100, 156, 321
PspXI VCTCGAGB 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 2 cut(s) 242, 330
SatI GCNGC 2 cut(s) 102, 399
Sau3AI GATC 2 cut(s) 38, 235
SchI GAGTC 1 cut(s) 367
ScrFI CCNGG 2 cut(s) 527, 528
SetI ASST 6 cut(s) 74, 139, 384, 458, 487, 511
Sfr274I CTCGAG 1 cut(s) 451
SlaI CTCGAG 1 cut(s) 451
SmaI CCCGGG 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
Sse9I AATT 1 cut(s) 333
SsiI CCGC 3 cut(s) 102, 399, 514
SspMI CTAG 2 cut(s) 341, 431
StyD4I CCNGG 2 cut(s) 525, 526
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 2 cut(s) 98, 549
TaqI TCGA 2 cut(s) 188, 452
TasI AATT 1 cut(s) 333
TauI GCSGC 2 cut(s) 104, 401
TfiI GAWTC 3 cut(s) 259, 302, 413
Tru1I TTAA 2 cut(s) 242, 330
Tru9I TTAA 2 cut(s) 242, 330
TscAI CASTG 1 cut(s) 554
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 315
TspMI CCCGGG 1 cut(s) 526
TspRI CASTG 1 cut(s) 554
VspI ATTAAT 1 cut(s) 242
XbaI TCTAGA 1 cut(s) 340
XhoI CTCGAG 1 cut(s) 451
XmaI CCCGGG 1 cut(s) 526
XspI CTAG 2 cut(s) 341, 431
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.