Rmu_sc0001142.1_g000016

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001142.1
OG0000161
Physical Location & Seq
Reverse (-)
82773 .. 83222
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001142.1_g000016.1.cds

Sequence Viewer

Length: 450 bp
atgcctgatgcatttactgatatcgcaaaagtgacgagatcacatataccagctgcaaatgtgcctgcaaggttagaagttcccaataaggggcacggtgctgcagatagaagcattgcaaccacacttagtggaggtgtggttgaggccgtggctcctcaaaggaagagggggaggccacttggttcaattgacactcacccaaggaagaaaagggcgagtaaggcacaaactgatccattaatcatcaatatagagaatccctctcacgagattgtctctgattatagttatctccatgagtcaatactggaggacgctccgatgtttgaaatgattccagagaacaaagaaatctcaatggattatgagagtgcgtatgagttgatagaagatcttccatacacattgatcatgtatttgcatacactgttgctcaagaaatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

149

Amino Acids

16.58

Weight (kDa)

5.85

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 89, 90
AgsI TTSAA 2 cut(s) 189, 332
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 230
AoxI GGCC 2 cut(s) 147, 176
ApeKI GCWGC 2 cut(s) 53, 101
AseI ATTAAT 1 cut(s) 242
Asp700I GAANNNNTTC 2 cut(s) 336, 396
AsuHPI GGTGA 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 96
BauI CACGAG 1 cut(s) 269
BbvI GCAGC 2 cut(s) 40, 88
BceAI ACGGC 1 cut(s) 134
BclI TGATCA 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 283
BfmI CTRYAG 1 cut(s) 102
BglII AGATCT 1 cut(s) 394
BisI GCNGC 2 cut(s) 54, 102
BlsI GCNGC 2 cut(s) 55, 103
BmiI GGNNCC 1 cut(s) 156
BplI GAGNNNNNCTC 4 cut(s) 248, 280, 263, 295
BpmI CTGGAG 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 150, 203
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 90
Bse1I ACTGG 1 cut(s) 315
Bse3DI GCAATG 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 150, 203
BseLI CCNNNNNNNGG 2 cut(s) 89, 90
BseMI GCAATG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 2 cut(s) 40, 88
BshFI GGCC 2 cut(s) 149, 178
BslI CCNNNNNNNGG 2 cut(s) 89, 90
BsmAI GTCTC 1 cut(s) 283
BsnI GGCC 2 cut(s) 149, 178
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 4 cut(s) 38, 235, 394, 411
BspANI GGCC 2 cut(s) 149, 178
BspLI GGNNCC 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 114
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 2 cut(s) 150, 203
BssMI GATC 4 cut(s) 38, 235, 394, 411
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 203
Bst2BI CACGAG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 98, 432
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 150
BstKTI GATC 4 cut(s) 41, 238, 397, 414
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 4 cut(s) 38, 235, 394, 411
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 40, 88
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 2 cut(s) 149, 178
BtgI CCRYGG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 428
Cac8I GCNNGC 1 cut(s) 66
CseI GACGC 1 cut(s) 326
CviAII CATG 2 cut(s) 299, 415
CviJI RGCY 4 cut(s) 53, 149, 155, 178
CviKI_1 RGCY 4 cut(s) 53, 149, 155, 178
DdeI CTNAG 1 cut(s) 128
DpnI GATC 4 cut(s) 40, 237, 396, 413
DpnII GATC 4 cut(s) 38, 235, 394, 411
DraIII CACNNNGTG 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 203
Eco32I GATATC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 2 cut(s) 302, 418
FatI CATG 2 cut(s) 298, 414
FbaI TGATCA 1 cut(s) 411
Fnu4HI GCNGC 2 cut(s) 54, 102
Fsp4HI GCNGC 2 cut(s) 54, 102
GluI GCNGC 2 cut(s) 54, 102
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 2 cut(s) 149, 178
HgaI GACGC 1 cut(s) 326
Hin1II CATG 2 cut(s) 302, 418
HinfI GANTC 3 cut(s) 259, 302, 337
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 283, 324
Hpy188III TCNNGA 3 cut(s) 269, 341, 439
HpyCH4III ACNGT 2 cut(s) 98, 432
HpyCH4V TGCA 6 cut(s) 11, 56, 68, 104, 119, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 2 cut(s) 302, 418
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 4 cut(s) 38, 235, 394, 411
LmnI GCTCC 2 cut(s) 160, 325
LpnPI CCDG 5 cut(s) 18, 63, 78, 296, 354
Lsp1109I GCAGC 2 cut(s) 40, 88
MaeIII GTNAC 1 cut(s) 31
MalI GATC 4 cut(s) 40, 237, 396, 413
MboI GATC 4 cut(s) 38, 235, 394, 411
MboII GAAGA 4 cut(s) 178, 220, 389, 404
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 189
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 7 cut(s) 128, 139, 162, 168, 168, 274, 307
Mph1103I ATGCAT 1 cut(s) 13
MroXI GAANNNNTTC 2 cut(s) 336, 396
MseI TTAA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 53
MunI CAATTG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 4 cut(s) 38, 235, 394, 411
NlaIII CATG 2 cut(s) 302, 418
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 13
PdmI GAANNNNTTC 2 cut(s) 336, 396
PfeI GAWTC 2 cut(s) 259, 337
PkrI GCNGC 2 cut(s) 55, 103
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PshBI ATTAAT 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 156
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 2 cut(s) 54, 102
Sau3AI GATC 4 cut(s) 38, 235, 394, 411
SchI GAGTC 1 cut(s) 311
SduI GDGCHC 1 cut(s) 96
SetI ASST 3 cut(s) 55, 74, 139
SfcI CTRYAG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 1 cut(s) 189
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 2 cut(s) 98, 432
TasI AATT 1 cut(s) 189
TfiI GAWTC 2 cut(s) 259, 337
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 2 cut(s) 53, 101
Tsp45I GTSAC 1 cut(s) 31
TspRI CASTG 1 cut(s) 435
VspI ATTAAT 1 cut(s) 242
XmnI GAANNNNTTC 2 cut(s) 336, 396
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.