Rmu_sc0006160.1_g000001

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006160.1
OG0000161
Physical Location & Seq
Reverse (-)
7993 .. 8454
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006160.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
atgggccctcaacgtcgattgggaatctacattggttttgattcaccatccattattcggtatttagaacccatgactggtgataccttcactgcacggtttgcagattgtcattttgatgagacaatattcccgccgttaggcggagataagactgttctaaataaacgtcgtgaattaatgtggactgtacccactatatcttatcttgatccttgtactaaagaaagtgaaattgaagtacgaaggattctgcaccttcaaaatattgctaacacaatgcctgatgcattcactaacatagcaaaagtgacaagatcacatatcccagcaataaatgcaccggcaagaattaatgtccaaattggacaaactaatgtggcggctaatgagccatctgttgcacgcctgaagcaagtagatatctcaatgactttatgtcttgtgactagttatcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

153

Amino Acids

17.18

Weight (kDa)

7.75

Isoelectric Point (pI)

63.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 134, 144, 383
AclWI GGATC 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 3 cut(s) 192, 220, 243
AfiI CCNNNNNNNGG 4 cut(s) 57, 77, 140, 143
AgsI TTSAA 2 cut(s) 239, 263
AhdI GACNNNNNGTC 1 cut(s) 438
AhlI ACTAGT 1 cut(s) 449
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 206
AoxI GGCC 1 cut(s) 4
ApaI GGGCCC 1 cut(s) 8
AseI ATTAAT 2 cut(s) 179, 354
AspS9I GGNCC 2 cut(s) 4, 5
AsuHPI GGTGA 2 cut(s) 36, 92
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 8
BccI CCATC 2 cut(s) 55, 403
BceAI ACGGC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 116
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 1 cut(s) 450
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
BmeRI GACNNNNNGTC 1 cut(s) 438
BmgT120I GGNCC 2 cut(s) 4, 5
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 277
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 77, 140, 143
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 4 cut(s) 57, 77, 140, 143
BseNI ACTGG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 8
BseYI CCCAGC 1 cut(s) 328
BsgI GTGCAG 2 cut(s) 78, 239
BshFI GGCC 1 cut(s) 6
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 4 cut(s) 57, 77, 140, 143
BsmAI GTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 1 cut(s) 6
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 211, 317
BspACI CCGC 3 cut(s) 134, 144, 383
BspANI GGCC 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 343
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 343
BssMI GATC 2 cut(s) 211, 317
Bst4CI ACNGT 3 cut(s) 99, 157, 190
BstAPI GCANNNNNTGC 2 cut(s) 101, 338
BstC8I GCNNGC 1 cut(s) 406
BstF5I GGATG 1 cut(s) 47
BstKTI GATC 2 cut(s) 214, 320
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 211, 317
BstMWI GCNNNNNNNGC 2 cut(s) 101, 338
BstSLI GKGCMC 1 cut(s) 8
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 4, 5
Csp6I GTAC 3 cut(s) 191, 219, 242
CviAII CATG 1 cut(s) 73
CviJI RGCY 3 cut(s) 6, 386, 394
CviKI_1 RGCY 3 cut(s) 6, 386, 394
CviQI GTAC 3 cut(s) 191, 219, 242
DpnI GATC 2 cut(s) 213, 319
DpnII GATC 2 cut(s) 211, 317
DriI GACNNNNNGTC 1 cut(s) 438
Eam1105I GACNNNNNGTC 1 cut(s) 438
EciI GGCGGA 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 8
Eco32I GATATC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 5
EcoRV GATATC 1 cut(s) 424
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 76
FaiI YATR 5 cut(s) 74, 200, 302, 324, 439
FatI CATG 1 cut(s) 72
FauI CCCGC 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 1 cut(s) 34
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 1 cut(s) 450
GluI GCNGC 1 cut(s) 384
GsaI CCCAGC 1 cut(s) 332
HaeIII GGCC 1 cut(s) 6
HapII CCGG 1 cut(s) 344
Hin1II CATG 1 cut(s) 76
HinfI GANTC 3 cut(s) 24, 41, 250
HpaII CCGG 1 cut(s) 344
HphI GGTGA 2 cut(s) 36, 92
Hpy166II GTNNAC 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 173, 209
Hpy8I GTNNAC 1 cut(s) 186
Hpy99I CGWCG 2 cut(s) 18, 174
HpyAV CCTTC 3 cut(s) 97, 240, 269
HpyCH4III ACNGT 3 cut(s) 99, 157, 190
HpyCH4IV ACGT 2 cut(s) 13, 169
HpyCH4V TGCA 6 cut(s) 95, 104, 256, 290, 341, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 338
HpySE526I ACGT 2 cut(s) 13, 169
Hsp92II CATG 1 cut(s) 76
Kzo9I GATC 2 cut(s) 211, 317
LpnPI CCDG 5 cut(s) 63, 297, 342, 357, 422
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 13, 169
MaeIII GTNAC 2 cut(s) 310, 445
MalI GATC 2 cut(s) 213, 319
MboI GATC 2 cut(s) 211, 317
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 176, 234, 351, 363
MnlI CCTC 1 cut(s) 18
Mph1103I ATGCAT 1 cut(s) 292
MseI TTAA 2 cut(s) 179, 354
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 1 cut(s) 344
Mva1269I GAATGC 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 101, 338
NdeII GATC 2 cut(s) 211, 317
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 310, 445
NsiI ATGCAT 1 cut(s) 292
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 3 cut(s) 24, 41, 250
PkrI GCNGC 1 cut(s) 385
PshBI ATTAAT 2 cut(s) 179, 354
PspFI CCCAGC 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 6
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 2 cut(s) 4, 5
RsaI GTAC 3 cut(s) 192, 220, 243
RsaNI GTAC 3 cut(s) 191, 219, 242
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 2 cut(s) 179, 354
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 2 cut(s) 211, 317
Sau96I GGNCC 2 cut(s) 4, 5
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 16, 89, 172, 261
SfaNI GCATC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 117
SpeI ACTAGT 1 cut(s) 449
Sse9I AATT 4 cut(s) 176, 234, 351, 363
SsiI CCGC 3 cut(s) 134, 144, 383
SspI AATATT 2 cut(s) 129, 268
SspMI CTAG 1 cut(s) 450
TaaI ACNGT 3 cut(s) 99, 157, 190
TaiI ACGT 2 cut(s) 16, 172
TaqI TCGA 1 cut(s) 16
TasI AATT 4 cut(s) 176, 234, 351, 363
TatI WGTACW 1 cut(s) 218
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 3 cut(s) 24, 41, 250
Tru1I TTAA 2 cut(s) 179, 354
Tru9I TTAA 2 cut(s) 179, 354
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 2 cut(s) 310, 445
Tsp45I GTSAC 2 cut(s) 310, 445
TspRI CASTG 1 cut(s) 97
VspI ATTAAT 2 cut(s) 179, 354
XspI CTAG 1 cut(s) 450
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.