Rmu_ssc0000213.1_g000082

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000213.1
Physical Location & Seq
Forward (+)
317812 .. 318147
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000213.1_g000082.1.cds

Sequence Viewer

Length: 336 bp
atgttcatcttcccgccattagggggagataagaacgttactgttcctgatgaacgacgtgaattgacgtggaatgtccccactatgtctcatcttgatccccgaaccgcacaatgtgataatgaagtgcggagaattctagatctacagagtgtagcccaaaatatgccagacgttttctctgatctagctaaagtgacgagatcatatatacctaatggtctacctcacttctgggcagggacatatgactggttagccgccatggtctacctccatctgggacgacacatcctacatggacgtctatccttgcaggcacatttgcagcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.75

Weight (kDa)

6.57

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 307
AccI GTMKAC 2 cut(s) 223, 270
AciI CCGC 4 cut(s) 14, 108, 130, 261
AclI AACGTT 1 cut(s) 36
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 304
AdeI CACNNNGTG 1 cut(s) 116
AfiI CCNNNNNNNGG 3 cut(s) 20, 23, 280
AjiI CACGTC 2 cut(s) 59, 69
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 1 cut(s) 135
BccI CCATC 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 2 cut(s) 140, 188
BfmI CTRYAG 1 cut(s) 146
BglII AGATCT 1 cut(s) 142
BisI GCNGC 2 cut(s) 261, 329
BlsI GCNGC 2 cut(s) 262, 330
BmgBI CACGTC 2 cut(s) 59, 69
BsaHI GRCGYC 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 23, 280
Bse1I ACTGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 3 cut(s) 20, 23, 280
BseNI ACTGG 1 cut(s) 257
BslFI GGGAC 3 cut(s) 62, 256, 297
BslI CCNNNNNNNGG 3 cut(s) 20, 23, 280
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 3 cut(s) 62, 256, 297
Bsp143I GATC 4 cut(s) 97, 142, 184, 203
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 4 cut(s) 14, 108, 130, 261
BspPI GGATC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 4 cut(s) 97, 142, 184, 203
BssNI GRCGYC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 291
BstKTI GATC 4 cut(s) 100, 145, 187, 206
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 4 cut(s) 97, 142, 184, 203
BstSFI CTRYAG 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BtgI CCRYGG 1 cut(s) 264
BtrI CACGTC 2 cut(s) 59, 69
BtsCI GGATG 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 318
CviAII CATG 2 cut(s) 265, 299
CviJI RGCY 3 cut(s) 158, 191, 260
CviKI_1 RGCY 3 cut(s) 158, 191, 260
DpnI GATC 4 cut(s) 99, 144, 186, 205
DpnII GATC 4 cut(s) 97, 142, 184, 203
DraIII CACNNNGTG 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 2 cut(s) 268, 302
FaiI YATR 9 cut(s) 86, 167, 208, 210, 212, 247, 249, 266, 300
FaqI GGGAC 3 cut(s) 62, 256, 297
FatI CATG 2 cut(s) 264, 298
FauI CCCGC 1 cut(s) 21
FauNDI CATATG 1 cut(s) 247
FblI GTMKAC 2 cut(s) 223, 270
Fnu4HI GCNGC 2 cut(s) 261, 329
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 2 cut(s) 261, 329
FspBI CTAG 2 cut(s) 140, 188
GluI GCNGC 2 cut(s) 261, 329
Hin1I GRCGYC 1 cut(s) 304
Hin1II CATG 2 cut(s) 268, 302
Hpy166II GTNNAC 2 cut(s) 224, 271
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 3 cut(s) 47, 95, 140
Hpy8I GTNNAC 2 cut(s) 224, 271
Hpy99I CGWCG 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 5 cut(s) 36, 58, 68, 174, 304
HpyCH4V TGCA 2 cut(s) 316, 328
HpySE526I ACGT 5 cut(s) 36, 58, 68, 174, 304
Hsp92I GRCGYC 1 cut(s) 304
Hsp92II CATG 2 cut(s) 268, 302
Kzo9I GATC 4 cut(s) 97, 142, 184, 203
LpnPI CCDG 7 cut(s) 60, 183, 220, 225, 238, 266, 302
MaeI CTAG 2 cut(s) 140, 188
MaeII ACGT 5 cut(s) 36, 58, 68, 174, 304
MaeIII GTNAC 2 cut(s) 37, 196
MalI GATC 4 cut(s) 99, 144, 186, 205
MboI GATC 4 cut(s) 97, 142, 184, 203
MflI RGATCY 1 cut(s) 142
MluCI AATT 2 cut(s) 62, 135
MnlI CCTC 2 cut(s) 237, 284
NcoI CCATGG 1 cut(s) 264
NdeI CATATG 1 cut(s) 247
NdeII GATC 4 cut(s) 97, 142, 184, 203
NlaIII CATG 2 cut(s) 268, 302
NmuCI GTSAC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 262, 330
Psp1406I AACGTT 1 cut(s) 36
PsuI RGATCY 1 cut(s) 142
SatI GCNGC 2 cut(s) 261, 329
Sau3AI GATC 4 cut(s) 97, 142, 184, 203
SetI ASST 9 cut(s) 39, 61, 71, 177, 193, 217, 229, 276, 307
SfcI CTRYAG 1 cut(s) 146
Sse9I AATT 2 cut(s) 62, 135
SsiI CCGC 4 cut(s) 14, 108, 130, 261
SspMI CTAG 2 cut(s) 140, 188
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 5 cut(s) 39, 61, 71, 177, 307
TasI AATT 2 cut(s) 62, 135
TauI GCSGC 1 cut(s) 263
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 66, 138
XapI RAATTY 1 cut(s) 135
XbaI TCTAGA 1 cut(s) 139
XmiI GTMKAC 2 cut(s) 223, 270
XspI CTAG 2 cut(s) 140, 188
ZraI GACGTC 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.