Rmu_sc0007967.1_g000003

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007967.1
OG0000161
Physical Location & Seq
Forward (+)
1846 .. 2256
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007967.1_g000003.1.cds

Sequence Viewer

Length: 411 bp
atgcaatattgcacgcagctttacttatttcgtttcagacccactgctagccaaccattttctgcgtaccagctggtaactggatatgagcctgacatttcacacttacgcatatctggttgcgtagtatatatgcctattacgcccccacagcgcactacactgggtcctcagagacgattaagtatttatgttggatacgaatccccaacaattatctgctatttggaaccctcgacaagcgatctctctaccgctagatttgcggattgtcactttgatgagacagtcttcccgtcgttatggggagataggaaaaaggattttccaagggaacgacatgaattttcgtggtttgtccccactctgtctcattttgatccccgcacttcacaaagtaaagtgaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

136

Amino Acids

15.87

Weight (kDa)

8.38

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 255, 266, 385
AclWI GGATC 1 cut(s) 374
AcsI RAATTY 1 cut(s) 344
AfaI GTAC 1 cut(s) 68
AluBI AGCT 2 cut(s) 19, 73
AluI AGCT 2 cut(s) 19, 73
Alw26I GTCTC 3 cut(s) 169, 278, 375
AlwI GGATC 1 cut(s) 374
ApeKI GCWGC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 344
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 167
AsuNHI GCTAGC 1 cut(s) 47
AvaII GGWCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 28
BciVI GTATCC 1 cut(s) 191
BcoDI GTCTC 3 cut(s) 169, 278, 375
BfaI CTAG 2 cut(s) 48, 258
BfuI GTATCC 1 cut(s) 191
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 2 cut(s) 168, 231
BmrI ACTGGG 1 cut(s) 173
BmtI GCTAGC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 283
BsaBI GATNNNNATC 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 85, 168
Bse8I GATNNNNATC 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 329
BseJI GATNNNNATC 1 cut(s) 202
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 85, 168
BseXI GCAGC 1 cut(s) 28
BslFI GGGAC 1 cut(s) 344
BsmAI GTCTC 3 cut(s) 169, 278, 375
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 344
Bsp143I GATC 2 cut(s) 244, 379
BspACI CCGC 3 cut(s) 255, 266, 385
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 168, 231
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 1 cut(s) 374
BsrI ACTGG 2 cut(s) 85, 168
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 2 cut(s) 244, 379
BssT1I CCWWGG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 289
BstC8I GCNNGC 2 cut(s) 14, 49
BstDEI CTNAG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 2 cut(s) 247, 382
BstMAI GTCTC 3 cut(s) 169, 278, 375
BstMBI GATC 2 cut(s) 244, 379
BstMWI GCNNNNNNNGC 3 cut(s) 142, 151, 263
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 283
BsuI GTATCC 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 161
Cac8I GCNNGC 2 cut(s) 14, 49
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 341
CviJI RGCY 4 cut(s) 19, 51, 73, 91
CviKI_1 RGCY 4 cut(s) 19, 51, 73, 91
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 246, 381
DpnII GATC 2 cut(s) 244, 379
Eco130I CCWWGG 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 329
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 1 cut(s) 344
FaiI YATR 8 cut(s) 87, 113, 130, 132, 134, 192, 304, 342
FaqI GGGAC 1 cut(s) 344
FatI CATG 1 cut(s) 340
FauI CCCGC 1 cut(s) 392
Fnu4HI GCNGC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 2 cut(s) 48, 258
GlaI GCGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 156
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 38, 174
Hpy99I CGWCG 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 2 cut(s) 4, 12
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 151, 263
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 244, 379
LpnPI CCDG 6 cut(s) 59, 66, 83, 102, 105, 149
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 2 cut(s) 48, 258
MaeIII GTNAC 2 cut(s) 76, 272
MalI GATC 2 cut(s) 246, 381
MboI GATC 2 cut(s) 244, 379
MboII GAAGA 1 cut(s) 283
MluCI AATT 2 cut(s) 213, 344
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 2 cut(s) 180, 244
MseI TTAA 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 73
MwoI GCNNNNNNNGC 3 cut(s) 142, 151, 263
NdeII GATC 2 cut(s) 244, 379
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 2 cut(s) 168, 231
NmuCI GTSAC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 18
PpuMI RGGWCCY 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 168, 231
PspPI GGNCC 1 cut(s) 167
PspPPI RGGWCCY 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 2 cut(s) 244, 379
Sau96I GGNCC 1 cut(s) 167
SetI ASST 2 cut(s) 21, 75
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 2 cut(s) 213, 344
SsiI CCGC 3 cut(s) 255, 266, 385
SspI AATATT 1 cut(s) 8
SspMI CTAG 2 cut(s) 48, 258
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 213, 344
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 2 cut(s) 49, 168
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 357
TspRI CASTG 2 cut(s) 49, 168
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 1 cut(s) 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XspI CTAG 2 cut(s) 48, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.