Rmu_sc0001918.1_g000011

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001918.1
Physical Location & Seq
Forward (+)
32197 .. 32538
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001918.1_g000011.1.cds

Sequence Viewer

Length: 342 bp
atgcctgatgcattcactgacacatcaaaagtgacaagatcacatatcccagcaataaatgcaccggcaagaattaatatccaaattggacaaaataatgtggcggccaatgagccatctgctgcacgcctgaagcgtggcagacctgtaggttcaaaagattcagttcctagaaagaggaaaacaaaggcacatctgaatcctaatgaaatcgcccctgaagagaatattaggcaagacattaatgtccgatacacaattcatgattctgtgactacagaagaggaaaatgacatcggtgagacaccagcccatgaagaggctcaggtacctgaattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.5

Weight (kDa)

6.07

Isoelectric Point (pI)

67.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
Acc65I GGTACC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 328
AciI CCGC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 105
AcuI CTGAAG 2 cut(s) 152, 240
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 319
AgsI TTSAA 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 296
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 122
AseI ATTAAT 2 cut(s) 75, 243
Asp718I GGTACC 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 311
BanI GGYRCC 1 cut(s) 328
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 2 cut(s) 147, 276
BisI GCNGC 2 cut(s) 105, 123
BlsI GCNGC 2 cut(s) 106, 124
BmiI GGNNCC 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 319
Bse118I RCCGGY 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 338
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 337
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 64
BssMI GATC 1 cut(s) 38
Bst6I CTCTTC 3 cut(s) 216, 276, 312
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 324
BstKTI GATC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSFI CTRYAG 2 cut(s) 147, 276
BstV1I GCAGC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 127
CciI TCATGA 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 64
Csp6I GTAC 1 cut(s) 329
CviAII CATG 2 cut(s) 263, 314
CviJI RGCY 4 cut(s) 107, 115, 311, 323
CviKI_1 RGCY 4 cut(s) 107, 115, 311, 323
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 3 cut(s) 216, 276, 312
EarI CTCTTC 3 cut(s) 216, 276, 312
Eco57I CTGAAG 2 cut(s) 152, 240
EcoT22I ATGCAT 1 cut(s) 13
FaeI CATG 2 cut(s) 266, 317
FaiI YATR 3 cut(s) 45, 264, 315
FatI CATG 2 cut(s) 262, 313
Fnu4HI GCNGC 2 cut(s) 105, 123
Fsp4HI GCNGC 2 cut(s) 105, 123
FspBI CTAG 1 cut(s) 171
GluI GCNGC 2 cut(s) 105, 123
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 65
Hin1II CATG 2 cut(s) 266, 317
HinfI GANTC 3 cut(s) 161, 199, 266
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 311
Hpy188I TCNGA 2 cut(s) 198, 251
Hpy188III TCNNGA 1 cut(s) 263
HpyCH4V TGCA 3 cut(s) 11, 62, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 2 cut(s) 266, 317
KpnI GGTACC 1 cut(s) 332
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 8 cut(s) 18, 63, 78, 143, 159, 231, 311, 321
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 31, 271
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 3 cut(s) 233, 293, 329
MluCI AATT 4 cut(s) 72, 84, 258, 335
MnlI CCTC 3 cut(s) 171, 277, 313
Mph1103I ATGCAT 1 cut(s) 13
MseI TTAA 2 cut(s) 75, 243
MspI CCGG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 1 cut(s) 38
NlaIII CATG 2 cut(s) 266, 317
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 2 cut(s) 31, 271
NsiI ATGCAT 1 cut(s) 13
PagI TCATGA 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PctI GAATGC 1 cut(s) 11
PfeI GAWTC 3 cut(s) 161, 199, 266
PkrI GCNGC 2 cut(s) 106, 124
PshBI ATTAAT 2 cut(s) 75, 243
PspFI CCCAGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 330
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SaqAI TTAA 2 cut(s) 75, 243
SatI GCNGC 2 cut(s) 105, 123
Sau3AI GATC 1 cut(s) 38
SetI ASST 4 cut(s) 148, 154, 330, 334
SfcI CTRYAG 2 cut(s) 147, 276
Sse9I AATT 4 cut(s) 72, 84, 258, 335
SsiI CCGC 1 cut(s) 104
SspI AATATT 1 cut(s) 229
SspMI CTAG 1 cut(s) 171
TasI AATT 4 cut(s) 72, 84, 258, 335
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 3 cut(s) 161, 199, 266
Tru1I TTAA 2 cut(s) 75, 243
Tru9I TTAA 2 cut(s) 75, 243
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 2 cut(s) 31, 271
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 2 cut(s) 31, 271
TspDTI ATGAA 3 cut(s) 222, 251, 330
TspRI CASTG 1 cut(s) 22
VspI ATTAAT 2 cut(s) 75, 243
XspI CTAG 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.