Rmu_sc0004101.1_g000009

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004101.1
Physical Location & Seq
Reverse (-)
38363 .. 38811
449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004101.1_g000009.1.cds

Sequence Viewer

Length: 375 bp
atgcctaatgcatttactgatatcgtaaaagtgatgagatcacatataccagctgcaaatgtgcctgcaaggttacaagtccccaacaaggggcacggcgccatagatagaggcgctgcaaccacacttagtgaaggtgtggttgaggttgtggctccccaaagaaagaggggaggccacttgaatccctcccataagattgtctctgattatagttatgtccatgaatcaatactgggggatgctccgatgtttgaaatgattccagagaacaaagaaatctcaatggattatgagagtgcttatgagttgaaggaaagatcttccatacacattgatgatgtatttgcatacactgttgctcaagaattatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

124

Amino Acids

13.7

Weight (kDa)

5.61

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 99
AdeI CACNNNGTG 1 cut(s) 131
AfiI CCNNNNNNNGG 3 cut(s) 88, 89, 90
AgsI TTSAA 3 cut(s) 184, 257, 313
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 208
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 53, 116
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 2 cut(s) 101, 116
BaeGI GKGCMC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 40, 103
BceAI ACGGC 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 208
BfoI RGCGCY 2 cut(s) 102, 117
BglII AGATCT 1 cut(s) 320
BisI GCNGC 2 cut(s) 54, 117
BlsI GCNGC 2 cut(s) 55, 118
BmiI GGNNCC 2 cut(s) 100, 156
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 89, 90
Bse1I ACTGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 3 cut(s) 88, 89, 90
BseNI ACTGG 1 cut(s) 240
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 2 cut(s) 40, 103
BshFI GGCC 1 cut(s) 177
BshNI GGYRCC 1 cut(s) 98
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 88, 89, 90
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 38, 320
BspANI GGCC 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 100, 156
BspT107I GGYRCC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 240
BssMI GATC 2 cut(s) 38, 320
BssNI GRCGYC 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 358
BstACI GRCGYC 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 247
BstH2I RGCGCY 2 cut(s) 102, 117
BstHHI GCGC 2 cut(s) 101, 116
BstKTI GATC 2 cut(s) 41, 323
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 2 cut(s) 38, 320
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 40, 103
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 2 cut(s) 101, 116
CviAII CATG 1 cut(s) 224
CviJI RGCY 3 cut(s) 53, 155, 177
CviKI_1 RGCY 3 cut(s) 53, 155, 177
DdeI CTNAG 1 cut(s) 128
DinI GGCGCC 1 cut(s) 100
DpnI GATC 2 cut(s) 40, 322
DpnII GATC 2 cut(s) 38, 320
DraIII CACNNNGTG 1 cut(s) 131
Eco32I GATATC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 13
EgeI GGCGCC 1 cut(s) 100
EheI GGCGCC 1 cut(s) 100
FaeI CATG 1 cut(s) 227
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 54, 117
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 54, 117
GlaI GCGC 2 cut(s) 100, 115
GluI GCNGC 2 cut(s) 54, 117
HaeII RGCGCY 2 cut(s) 102, 117
HaeIII GGCC 1 cut(s) 177
HhaI GCGC 2 cut(s) 101, 116
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 2 cut(s) 99, 114
HinP1I GCGC 2 cut(s) 99, 114
HinfI GANTC 3 cut(s) 184, 227, 262
Hpy188I TCNGA 2 cut(s) 208, 249
Hpy188III TCNNGA 2 cut(s) 266, 365
HpyAV CCTTC 2 cut(s) 128, 307
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4V TGCA 5 cut(s) 11, 56, 68, 119, 350
HpyF3I CTNAG 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 2 cut(s) 99, 114
KasI GGCGCC 1 cut(s) 98
Kzo9I GATC 2 cut(s) 38, 320
LmnI GCTCC 2 cut(s) 160, 250
LpnPI CCDG 4 cut(s) 63, 78, 221, 279
Lsp1109I GCAGC 2 cut(s) 40, 103
LweI GCATC 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 72
MalI GATC 2 cut(s) 40, 322
MboI GATC 2 cut(s) 38, 320
MboII GAAGA 1 cut(s) 315
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 368
Mly113I GGCGCC 1 cut(s) 99
MnlI CCTC 5 cut(s) 104, 139, 162, 167, 199
Mph1103I ATGCAT 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 53
NarI GGCGCC 1 cut(s) 99
NdeII GATC 2 cut(s) 38, 320
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 2 cut(s) 100, 156
NsiI ATGCAT 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 3 cut(s) 184, 227, 262
PkrI GCNGC 2 cut(s) 55, 118
PluTI GGCGCC 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 100, 156
PsuI RGATCY 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 336
SatI GCNGC 2 cut(s) 54, 117
Sau3AI GATC 2 cut(s) 38, 320
SduI GDGCHC 1 cut(s) 96
SetI ASST 4 cut(s) 55, 74, 139, 150
SfaNI GCATC 1 cut(s) 232
SfoI GGCGCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
Sse9I AATT 1 cut(s) 368
SspDI GGCGCC 1 cut(s) 98
TaaI ACNGT 1 cut(s) 358
TasI AATT 1 cut(s) 368
TfiI GAWTC 3 cut(s) 184, 227, 262
TscAI CASTG 1 cut(s) 361
TseI GCWGC 2 cut(s) 53, 116
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 261
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.