Rmu_sc0021416.1_g000005

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021416.1
OG0000161
Physical Location & Seq
Reverse (-)
17511 .. 18001
491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021416.1_g000005.1.cds

Sequence Viewer

Length: 396 bp
atgcttgatgcgtttactgatatcgcaaaagtgactagatcacatataccagctgcaaatgtgcctgcaaggttagaagtccccaacaagaggcacagtgccgcagacagaggcactgcaaccacacttagtggaggtgtggttgaggttgtggctccccaaaggaagaaggggaggccacttggttcgattgacactcacccaaggaagaagaggcgagatgctccgatgtttgaaatgattccagagaacaaagaaatctcaatgggttttgagagtgcgtatgagttgatagaaagatcttccatacacattgatgatgtatttgcatacactattgctcaagaaatcatagagcacgatgatatcgaaccacgctctgttgcagaatgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

131

Amino Acids

14.56

Weight (kDa)

5.95

Isoelectric Point (pI)

68.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 102
AdeI CACNNNGTG 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 236
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 360
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 40
BfaI CTAG 1 cut(s) 36
BglII AGATCT 1 cut(s) 299
BisI GCNGC 2 cut(s) 54, 102
BlsI GCNGC 2 cut(s) 55, 103
BmiI GGNNCC 1 cut(s) 156
BmsI GCATC 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 360
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 2 cut(s) 38, 299
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 38, 299
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 128
BstKTI GATC 2 cut(s) 41, 302
BstMBI GATC 2 cut(s) 38, 299
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BsuRI GGCC 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 103, 114
Cac8I GCNNGC 1 cut(s) 66
CviJI RGCY 3 cut(s) 53, 155, 178
CviKI_1 RGCY 3 cut(s) 53, 155, 178
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 40, 301
DpnII GATC 2 cut(s) 38, 299
DraIII CACNNNGTG 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 203
Eco32I GATATC 2 cut(s) 22, 367
EcoRV GATATC 2 cut(s) 22, 367
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaiI YATR 6 cut(s) 45, 47, 285, 308, 331, 353
FaqI GGGAC 1 cut(s) 65
Fnu4HI GCNGC 2 cut(s) 54, 102
Fsp4HI GCNGC 2 cut(s) 54, 102
FspBI CTAG 1 cut(s) 36
GluI GCNGC 2 cut(s) 54, 102
HaeIII GGCC 1 cut(s) 178
HinfI GANTC 1 cut(s) 241
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 245, 344
Hpy8I GTNNAC 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 5 cut(s) 56, 68, 119, 329, 386
HpyF3I CTNAG 1 cut(s) 128
Kzo9I GATC 2 cut(s) 38, 299
LmnI GCTCC 2 cut(s) 160, 229
LpnPI CCDG 3 cut(s) 63, 78, 258
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 40, 301
MboI GATC 2 cut(s) 38, 299
MboII GAAGA 4 cut(s) 178, 220, 223, 294
MflI RGATCY 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 360
MnlI CCTC 6 cut(s) 84, 104, 128, 139, 168, 207
MroXI GAANNNNTTC 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 53
NdeII GATC 2 cut(s) 38, 299
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 2 cut(s) 55, 103
PspN4I GGNNCC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 315
SatI GCNGC 2 cut(s) 54, 102
Sau3AI GATC 2 cut(s) 38, 299
SduI GDGCHC 1 cut(s) 360
SetI ASST 4 cut(s) 55, 74, 139, 150
SfaNI GCATC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 342
SmoI CTYRAG 1 cut(s) 342
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 2 cut(s) 188, 369
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 2 cut(s) 103, 121
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 31
TspRI CASTG 2 cut(s) 103, 121
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.