Rmu_co8214666.1_g000002

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8214666.1
OG0000161
Physical Location & Seq
Reverse (-)
168 .. 715
548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8214666.1_g000002.1.cds

Sequence Viewer

Length: 414 bp
atgggtccacaactgcgaatgagcatctatgttggctatgaatcttcaactatcgtccgctatcttgaacccttgacaggcgatctctttaccgctagatttgcggattgtcactttgatgagacagccttcccatcgttagggggagataagaacatagatgtcagacatacctgctgcaagcgtgcctgcaatagacataacgccacttctttaacaccaggagatgacgccattgcaattggcaacgatgtggcgtctatggccacaggtcctgcacggaagcgtggtagaccgattggttcgaaggatactcgccctagaaagagagtgaatgaggcacaaacgaatcctttgatcatcgatactcaaaatccgtcccatgagaatgtttcggattatggttatgtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

137

Amino Acids

15.07

Weight (kDa)

7.7

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 182
AccI GTMKAC 1 cut(s) 292
AciI CCGC 3 cut(s) 58, 93, 104
AcoI YGGCCR 1 cut(s) 264
AcyI GRCGYC 2 cut(s) 231, 257
AfiI CCNNNNNNNGG 2 cut(s) 77, 140
AgsI TTSAA 2 cut(s) 48, 68
AjnI CCWGG 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 116
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 1 cut(s) 177
AspS9I GGNCC 2 cut(s) 5, 272
AsuII TTCGAA 1 cut(s) 305
AvaII GGWCC 2 cut(s) 5, 272
BalI TGGCCA 1 cut(s) 266
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 222
BciVI GTATCC 1 cut(s) 304
BclI TGATCA 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 96, 321
BfuAI ACCTGC 1 cut(s) 182
BfuI GTATCC 1 cut(s) 304
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 2 cut(s) 5, 272
BmgT120I GGNCC 2 cut(s) 5, 272
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 363
BsaHI GRCGYC 2 cut(s) 231, 257
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 140
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 222
BseCI ATCGAT 1 cut(s) 363
BseLI CCNNNNNNNGG 2 cut(s) 77, 140
BseMI GCAATG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 1 cut(s) 266
BshVI ATCGAT 1 cut(s) 363
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 2 cut(s) 77, 140
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 1 cut(s) 266
Bsp119I TTCGAA 1 cut(s) 305
Bsp143I GATC 2 cut(s) 82, 357
BspACI CCGC 3 cut(s) 58, 93, 104
BspANI GGCC 1 cut(s) 266
BspDI ATCGAT 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 182
BspT104I TTCGAA 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 234
BssMI GATC 2 cut(s) 82, 357
BssNI GRCGYC 2 cut(s) 231, 257
Bst2UI CCWGG 1 cut(s) 222
BstACI GRCGYC 2 cut(s) 231, 257
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 182, 186, 190
BstKTI GATC 2 cut(s) 85, 360
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 82, 357
BstMWI GCNNNNNNNGC 2 cut(s) 101, 263
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 363
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 1 cut(s) 266
BsuTUI ATCGAT 1 cut(s) 363
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 3 cut(s) 182, 186, 190
CaiI CAGNNNCTG 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 5, 272
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 2 cut(s) 239, 246
CviAII CATG 1 cut(s) 383
CviJI RGCY 3 cut(s) 36, 128, 266
CviKI_1 RGCY 3 cut(s) 36, 128, 266
DpnI GATC 2 cut(s) 84, 359
DpnII GATC 2 cut(s) 82, 357
EaeI YGGCCR 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 5, 272
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 220
FaeI CATG 1 cut(s) 386
FaiI YATR 9 cut(s) 30, 39, 158, 171, 201, 263, 384, 402, 408
FaqI GGGAC 1 cut(s) 364
FatI CATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 357
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 2 cut(s) 96, 321
GluI GCNGC 1 cut(s) 178
HaeIII GGCC 1 cut(s) 266
HgaI GACGC 2 cut(s) 239, 246
Hin1I GRCGYC 2 cut(s) 231, 257
Hin1II CATG 1 cut(s) 386
HinfI GANTC 2 cut(s) 41, 349
Hpy166II GTNNAC 2 cut(s) 8, 293
Hpy188I TCNGA 2 cut(s) 167, 397
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 2 cut(s) 8, 293
HpyAV CCTTC 2 cut(s) 139, 301
HpyCH4V TGCA 4 cut(s) 180, 192, 239, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 263
Hsp92I GRCGYC 2 cut(s) 231, 257
Hsp92II CATG 1 cut(s) 386
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 2 cut(s) 82, 357
LpnPI CCDG 7 cut(s) 63, 187, 202, 207, 234, 255, 288
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 33
MaeI CTAG 2 cut(s) 96, 321
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 84, 359
MboI GATC 2 cut(s) 82, 357
MboII GAAGA 1 cut(s) 36
MfeI CAATTG 1 cut(s) 240
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 1 cut(s) 240
MluNI TGGCCA 1 cut(s) 266
MnlI CCTC 1 cut(s) 331
Mox20I TGGCCA 1 cut(s) 266
MscI TGGCCA 1 cut(s) 266
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 2 cut(s) 117, 387
Msp20I TGGCCA 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 101, 263
NdeII GATC 2 cut(s) 82, 357
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 110
NspV TTCGAA 1 cut(s) 305
PfeI GAWTC 2 cut(s) 41, 349
PkrI GCNGC 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 5, 272
PspPPI RGGWCCY 1 cut(s) 272
PstNI CAGNNNCTG 1 cut(s) 275
RseI CAYNNNNRTG 2 cut(s) 117, 387
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 2 cut(s) 82, 357
Sau96I GGNCC 2 cut(s) 5, 272
ScrFI CCNGG 1 cut(s) 222
SetI ASST 2 cut(s) 176, 274
SfaNI GCATC 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 2 cut(s) 5, 272
SmiMI CAYNNNNRTG 2 cut(s) 117, 387
Sse9I AATT 1 cut(s) 240
SsiI CCGC 3 cut(s) 58, 93, 104
SspMI CTAG 2 cut(s) 96, 321
StyD4I CCNGG 1 cut(s) 220
TaqI TCGA 2 cut(s) 305, 363
TaqII GACCGA 1 cut(s) 310
TasI AATT 1 cut(s) 240
TfiI GAWTC 2 cut(s) 41, 349
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 54
TspGWI ACGGA 2 cut(s) 295, 366
VpaK11BI GGWCC 2 cut(s) 5, 272
XmiI GTMKAC 1 cut(s) 292
XspI CTAG 2 cut(s) 96, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.