Rmu_sc0006583.1_g000024

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006583.1
Physical Location & Seq
Reverse (-)
102657 .. 103295
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006583.1_g000024.1.cds

Sequence Viewer

Length: 639 bp
atgagcctgacatttcatactcacgcatatttggttgcgcaatatatatgcctattgcgcccccacaatgcactaaaatggggttctcagagacgattaagtatttatgttagatacaaatccccaacaattatccgctacttggaacccttgataggtgatctctttacctctagatttgtggattgtcactttgatgagacagtcttcccggataggaaaaaatattttctaagggaacgacatgaattgtcgtggtttgtccccactctgtctcattttgatccccgcacttcacaatgtgaaagtgaagtgaaaagaataatcgatcttcagaaagtagcagattcgatgcctgatgcatttactgatatcacaaaagtgacgagatcacatatactagctgcaaatgtgcctacatggttagaagttcccaacaaggggcacggtactgcagatagaggcactgcaaccacacttaatgaaggtgtggttgaggccgtggttccccaaagagagagggggaggtcacttggttcgattgacactcacccaaggaagaagaaggcgagtaaggcacaaaccgacccattaatcatcaatgtagagaattcctctcatgagattgtctctgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

212

Amino Acids

24.28

Weight (kDa)

8.97

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 39
AciI CCGC 2 cut(s) 136, 289
AclWI GGATC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 610
AcuI CTGAAG 1 cut(s) 317
AdeI CACNNNGTG 1 cut(s) 302
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 4 cut(s) 142, 155, 440, 441
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 1 cut(s) 404
AluI AGCT 1 cut(s) 404
Alw26I GTCTC 4 cut(s) 85, 194, 279, 634
AlwI GGATC 1 cut(s) 278
AoxI GGCC 1 cut(s) 498
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 610
AseI ATTAAT 1 cut(s) 593
AspLEI GCGC 2 cut(s) 40, 60
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 170, 542
BaeGI GKGCMC 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 391
BceAI ACGGC 1 cut(s) 485
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 4 cut(s) 85, 194, 279, 634
BfaI CTAG 2 cut(s) 174, 401
BfmI CTRYAG 1 cut(s) 453
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme1390I CCNGG 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 147, 507
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 2 cut(s) 342, 349
BpiI GAAGAC 1 cut(s) 199
BplI GAGNNNNNCTC 3 cut(s) 599, 631, 614
BpuMI CCSGG 1 cut(s) 212
Bsa29I ATCGAT 1 cut(s) 327
BsaBI GATNNNNATC 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 501, 554
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 155, 440, 441
Bse8I GATNNNNATC 1 cut(s) 118
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 501, 554
BseJI GATNNNNATC 1 cut(s) 118
BseLI CCNNNNNNNGG 4 cut(s) 142, 155, 440, 441
BseMII CTCAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 1 cut(s) 391
BshFI GGCC 1 cut(s) 500
BshVI ATCGAT 1 cut(s) 327
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 4 cut(s) 142, 155, 440, 441
BsmAI GTCTC 4 cut(s) 85, 194, 279, 634
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 4 cut(s) 160, 283, 328, 389
BspACI CCGC 2 cut(s) 136, 289
BspANI GGCC 1 cut(s) 500
BspCNI CTCAG 1 cut(s) 100
BspDI ATCGAT 1 cut(s) 327
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 2 cut(s) 147, 507
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 501, 554
BssMI GATC 4 cut(s) 160, 283, 328, 389
BssT1I CCWWGG 1 cut(s) 554
Bst4CI ACNGT 2 cut(s) 205, 449
BstDEI CTNAG 2 cut(s) 87, 233
BstDSI CCRYGG 1 cut(s) 501
BstHHI GCGC 2 cut(s) 40, 60
BstKTI GATC 4 cut(s) 163, 286, 331, 392
BstMAI GTCTC 4 cut(s) 85, 194, 279, 634
BstMBI GATC 4 cut(s) 160, 283, 328, 389
BstMWI GCNNNNNNNGC 2 cut(s) 57, 575
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 327
BsuRI GGCC 1 cut(s) 500
BsuTUI ATCGAT 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 501
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 465
CciI TCATGA 1 cut(s) 619
CfoI GCGC 2 cut(s) 40, 60
ClaI ATCGAT 1 cut(s) 327
Csp6I GTAC 1 cut(s) 450
CviAII CATG 3 cut(s) 245, 420, 620
CviJI RGCY 3 cut(s) 6, 404, 500
CviKI_1 RGCY 3 cut(s) 6, 404, 500
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 2 cut(s) 87, 233
DpnI GATC 4 cut(s) 162, 285, 330, 391
DpnII GATC 4 cut(s) 160, 283, 328, 389
DraIII CACNNNGTG 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 554
Eco32I GATATC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 317
EcoRI GAATTC 1 cut(s) 610
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 554
EcoT22I ATGCAT 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 554
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 3 cut(s) 248, 423, 623
FaqI GGGAC 1 cut(s) 248
FatI CATG 3 cut(s) 244, 419, 619
FauI CCCGC 1 cut(s) 296
Fnu4HI GCNGC 1 cut(s) 405
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 2 cut(s) 174, 401
FspI TGCGCA 1 cut(s) 39
GlaI GCGC 2 cut(s) 39, 59
GluI GCNGC 1 cut(s) 405
HaeIII GGCC 1 cut(s) 500
HapII CCGG 1 cut(s) 212
HhaI GCGC 2 cut(s) 40, 60
Hin1II CATG 3 cut(s) 248, 423, 623
Hin6I GCGC 2 cut(s) 38, 58
HinP1I GCGC 2 cut(s) 38, 58
HinfI GANTC 1 cut(s) 347
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 170, 542
Hpy188I TCNGA 3 cut(s) 90, 336, 634
Hpy188III TCNNGA 2 cut(s) 174, 620
HpyAV CCTTC 2 cut(s) 479, 559
HpyCH4III ACNGT 2 cut(s) 205, 449
HpyCH4V TGCA 5 cut(s) 71, 362, 407, 455, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 575
HpyF3I CTNAG 2 cut(s) 87, 233
Hsp92II CATG 3 cut(s) 248, 423, 623
HspAI GCGC 2 cut(s) 38, 58
Kzo9I GATC 4 cut(s) 160, 283, 328, 389
LpnPI CCDG 3 cut(s) 20, 225, 369
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 2 cut(s) 342, 349
MaeI CTAG 2 cut(s) 174, 401
MaeIII GTNAC 3 cut(s) 188, 382, 528
MalI GATC 4 cut(s) 162, 285, 330, 391
MboI GATC 4 cut(s) 160, 283, 328, 389
MboII GAAGA 4 cut(s) 199, 323, 571, 574
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 3 cut(s) 129, 248, 610
MnlI CCTC 6 cut(s) 181, 455, 490, 513, 519, 625
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 4 cut(s) 98, 480, 593, 637
MslI CAYNNNNRTG 3 cut(s) 76, 195, 380
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 212
MwoI GCNNNNNNNGC 2 cut(s) 57, 575
NciI CCSGG 1 cut(s) 212
NdeII GATC 4 cut(s) 160, 283, 328, 389
NlaIII CATG 3 cut(s) 248, 423, 623
NlaIV GGNNCC 2 cut(s) 147, 507
NmuCI GTSAC 3 cut(s) 188, 382, 528
NsbI TGCGCA 1 cut(s) 39
NsiI ATGCAT 1 cut(s) 364
OliI CACNNNNGTG 1 cut(s) 380
PagI TCATGA 1 cut(s) 619
PfeI GAWTC 1 cut(s) 347
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 1 cut(s) 406
PshBI ATTAAT 1 cut(s) 593
PspN4I GGNNCC 2 cut(s) 147, 507
PstI CTGCAG 1 cut(s) 457
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
RseI CAYNNNNRTG 3 cut(s) 76, 195, 380
SaqAI TTAA 4 cut(s) 98, 480, 593, 637
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 4 cut(s) 160, 283, 328, 389
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 1 cut(s) 447
SetI ASST 5 cut(s) 160, 173, 406, 490, 530
SfaNI GCATC 2 cut(s) 342, 349
SfcI CTRYAG 1 cut(s) 453
SmiMI CAYNNNNRTG 3 cut(s) 76, 195, 380
Sse9I AATT 3 cut(s) 129, 248, 610
SsiI CCGC 2 cut(s) 136, 289
SspI AATATT 1 cut(s) 227
SspMI CTAG 2 cut(s) 174, 401
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 2 cut(s) 205, 449
TaqI TCGA 3 cut(s) 327, 350, 539
TasI AATT 3 cut(s) 129, 248, 610
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 4 cut(s) 98, 480, 593, 637
Tru9I TTAA 4 cut(s) 98, 480, 593, 637
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 3 cut(s) 188, 382, 528
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 3 cut(s) 188, 382, 528
TspDTI ATGAA 3 cut(s) 5, 261, 498
TspRI CASTG 1 cut(s) 472
VspI ATTAAT 1 cut(s) 593
XapI RAATTY 1 cut(s) 610
XbaI TCTAGA 1 cut(s) 173
XspI CTAG 2 cut(s) 174, 401
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.