Rmu_sc0008642.1_g000001

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008642.1
OG0000161
Physical Location & Seq
Forward (+)
1 .. 1531
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008642.1_g000001.1.cds

Sequence Viewer

Length: 642 bp
tctagtggactgtacctcactacgattcggatcattgaatcatatgttgtcaccaacaatgaaatgtgggacactgactcacacaagctttggcatgaccgcctagggcaccctggtcgtgacatgatgatccgtattttgaagaactcacacgaacatcctttctttcgagtgaaaaataaaatgggagaaaaatccgccacactgaaaggtgtcggtcctctgacgagatcacatataccagctgcaaatgtgcctgcaaggttagaagtccccaataaggggcacggtgctgcagatagaagcactgcaaccacacttagtggaggtgtggttgaggccgtggctcctcaaaggaagagggggaggccacttggttcaattgacactcacccaaggaagaaaagggcgagtaaggcacaaactgatccattaatcatcaatatagagaatccctctcatgagattgtctctgattatagttatctccatgaatcaatactggaggacgctccgatgtttgaaatgattccagagaacaaagaaatctcaatggattatgagagtgcgtatgagttgatagaagatcttccatacacattgatcatgtatttgcatacactgttgctcaagaaatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

213

Amino Acids

24.05

Weight (kDa)

7.19

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AciI CCGC 2 cut(s) 100, 198
AclWI GGATC 3 cut(s) 38, 124, 422
AdeI CACNNNGTG 1 cut(s) 323
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 3 cut(s) 280, 281, 282
AgsI TTSAA 4 cut(s) 38, 142, 381, 524
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 2 cut(s) 88, 245
AluI AGCT 2 cut(s) 88, 245
Alw26I GTCTC 1 cut(s) 475
AlwI GGATC 3 cut(s) 38, 124, 422
AoxI GGCC 2 cut(s) 339, 368
ApeKI GCWGC 2 cut(s) 245, 293
AseI ATTAAT 1 cut(s) 434
Asp700I GAANNNNTTC 2 cut(s) 528, 588
AspA2I CCTAGG 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 43, 383
AvaII GGWCC 1 cut(s) 218
AvrII CCTAGG 1 cut(s) 103
BaeGI GKGCMC 2 cut(s) 111, 288
BanI GGYRCC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 232, 280
BceAI ACGGC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 1 cut(s) 114
BclI TGATCA 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 2 cut(s) 3, 104
BfmI CTRYAG 1 cut(s) 294
BglII AGATCT 1 cut(s) 586
BisI GCNGC 2 cut(s) 246, 294
BlnI CCTAGG 1 cut(s) 103
BlsI GCNGC 2 cut(s) 247, 295
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 110, 348
BmrFI CCNGG 1 cut(s) 114
BplI GAGNNNNNCTC 4 cut(s) 440, 472, 455, 487
BpmI CTGGAG 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 614
BsaBI GATNNNNATC 1 cut(s) 29
BsaJI CCNNGG 4 cut(s) 103, 112, 342, 395
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 3 cut(s) 280, 281, 282
Bse1I ACTGG 1 cut(s) 507
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 4 cut(s) 103, 112, 342, 395
BseGI GGATG 1 cut(s) 157
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 3 cut(s) 280, 281, 282
BseNI ACTGG 1 cut(s) 507
BseRI GAGGAG 1 cut(s) 339
BseSI GKGCMC 2 cut(s) 111, 288
BseXI GCAGC 2 cut(s) 232, 280
BshFI GGCC 2 cut(s) 341, 370
BshNI GGYRCC 1 cut(s) 108
BslFI GGGAC 2 cut(s) 83, 257
BslI CCNNNNNNNGG 3 cut(s) 280, 281, 282
BsmAI GTCTC 1 cut(s) 475
BsmFI GGGAC 2 cut(s) 83, 257
BsnI GGCC 2 cut(s) 341, 370
Bsp1286I GDGCHC 2 cut(s) 111, 288
Bsp143I GATC 6 cut(s) 30, 129, 230, 427, 586, 603
BspACI CCGC 2 cut(s) 100, 198
BspANI GGCC 2 cut(s) 341, 370
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 110, 348
BspMAI CTGCAG 1 cut(s) 298
BspPI GGATC 3 cut(s) 38, 124, 422
BspT107I GGYRCC 1 cut(s) 108
BsrI ACTGG 1 cut(s) 507
BssECI CCNNGG 4 cut(s) 103, 112, 342, 395
BssMI GATC 6 cut(s) 30, 129, 230, 427, 586, 603
BssT1I CCWWGG 2 cut(s) 103, 395
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 12, 290, 624
Bst6I CTCTTC 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 320
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 6 cut(s) 33, 132, 233, 430, 589, 606
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 6 cut(s) 30, 129, 230, 427, 586, 603
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 2 cut(s) 111, 288
BstV1I GCAGC 2 cut(s) 232, 280
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BsuRI GGCC 2 cut(s) 341, 370
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 4 cut(s) 72, 203, 306, 620
Cac8I GCNNGC 1 cut(s) 258
CciI TCATGA 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 518
Csp6I GTAC 1 cut(s) 13
CviAII CATG 5 cut(s) 95, 124, 461, 491, 607
CviJI RGCY 5 cut(s) 88, 245, 341, 347, 370
CviKI_1 RGCY 5 cut(s) 88, 245, 341, 347, 370
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 320
DpnI GATC 6 cut(s) 32, 131, 232, 429, 588, 605
DpnII GATC 6 cut(s) 30, 129, 230, 427, 586, 603
DraIII CACNNNGTG 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 1 cut(s) 187
Eco130I CCWWGG 2 cut(s) 103, 395
Eco47I GGWCC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 103, 395
ErhI CCWWGG 2 cut(s) 103, 395
FaeI CATG 5 cut(s) 98, 127, 464, 494, 610
FaqI GGGAC 2 cut(s) 83, 257
FatI CATG 5 cut(s) 94, 123, 460, 490, 606
FauNDI CATATG 1 cut(s) 43
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 2 cut(s) 246, 294
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 2 cut(s) 246, 294
FspBI CTAG 2 cut(s) 3, 104
GluI GCNGC 2 cut(s) 246, 294
GsuI CTGGAG 1 cut(s) 524
HaeIII GGCC 2 cut(s) 341, 370
HgaI GACGC 1 cut(s) 518
Hin1II CATG 5 cut(s) 98, 127, 464, 494, 610
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 6 cut(s) 25, 38, 77, 451, 494, 529
HphI GGTGA 2 cut(s) 43, 383
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 4 cut(s) 30, 225, 475, 516
Hpy188III TCNNGA 4 cut(s) 119, 461, 533, 631
Hpy8I GTNNAC 1 cut(s) 8
HpyCH4III ACNGT 3 cut(s) 12, 290, 624
HpyCH4V TGCA 5 cut(s) 248, 260, 296, 311, 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 5 cut(s) 98, 127, 464, 494, 610
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 6 cut(s) 30, 129, 230, 427, 586, 603
LmnI GCTCC 2 cut(s) 352, 517
LpnPI CCDG 6 cut(s) 99, 126, 255, 270, 488, 546
Lsp1109I GCAGC 2 cut(s) 232, 280
MaeI CTAG 2 cut(s) 3, 104
MaeIII GTNAC 2 cut(s) 49, 119
MalI GATC 6 cut(s) 32, 131, 232, 429, 588, 605
MboI GATC 6 cut(s) 30, 129, 230, 427, 586, 603
MboII GAAGA 5 cut(s) 154, 370, 412, 581, 596
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 2 cut(s) 111, 288
MluCI AATT 1 cut(s) 381
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 9 cut(s) 26, 231, 320, 331, 354, 360, 360, 466, 499
MroXI GAANNNNTTC 2 cut(s) 528, 588
MseI TTAA 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 416
NdeI CATATG 1 cut(s) 43
NdeII GATC 6 cut(s) 30, 129, 230, 427, 586, 603
NlaIII CATG 5 cut(s) 98, 127, 464, 494, 610
NlaIV GGNNCC 2 cut(s) 110, 348
NmuCI GTSAC 2 cut(s) 49, 119
PagI TCATGA 1 cut(s) 460
PdmI GAANNNNTTC 2 cut(s) 528, 588
PfeI GAWTC 5 cut(s) 25, 38, 451, 494, 529
PkrI GCNGC 2 cut(s) 247, 295
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 110, 348
PspPI GGNCC 1 cut(s) 218
PstI CTGCAG 1 cut(s) 298
PsuI RGATCY 1 cut(s) 586
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 2 cut(s) 246, 294
Sau3AI GATC 6 cut(s) 30, 129, 230, 427, 586, 603
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 2 cut(s) 111, 288
SetI ASST 6 cut(s) 18, 90, 214, 247, 266, 331
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 1 cut(s) 381
SsiI CCGC 2 cut(s) 100, 198
SspMI CTAG 2 cut(s) 3, 104
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 2 cut(s) 103, 395
TaaI ACNGT 3 cut(s) 12, 290, 624
TaqI TCGA 1 cut(s) 169
TaqII GACCGA 1 cut(s) 206
TasI AATT 1 cut(s) 381
TfiI GAWTC 5 cut(s) 25, 38, 451, 494, 529
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TscAI CASTG 4 cut(s) 79, 210, 313, 627
TseFI GTSAC 2 cut(s) 49, 119
TseI GCWGC 2 cut(s) 245, 293
Tsp45I GTSAC 2 cut(s) 49, 119
TspDTI ATGAA 2 cut(s) 75, 507
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 4 cut(s) 79, 210, 313, 627
VpaK11BI GGWCC 1 cut(s) 218
VspI ATTAAT 1 cut(s) 434
XmaJI CCTAGG 1 cut(s) 103
XmnI GAANNNNTTC 2 cut(s) 528, 588
XspI CTAG 2 cut(s) 3, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.