Rmu_sc0002460.1_g000071

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002460.1
Physical Location & Seq
Reverse (-)
323148 .. 323681
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002460.1_g000071.1.cds

Sequence Viewer

Length: 534 bp
atgcctgatgcatttactgatatcgcaaaattgacgagatcacatataccagctgcaaatgtgcctgcaagattagaagtccccaacaaggggaccggtgccgcagatagaggcactgcaaccacacttagaggaggtgtggttgaggccgtggctccccaaaggaagagggggaggccacttggttcgattgacactcacccaaggaagaagaggatgaataaggcacaaaccgatctattaatcatcaatgtagagaatccctctcatgacagaattgtctctgattacagttatgtccatgcatcaatactggaggatgctccgatgtttgaaatgattccagagaacaaagaaatctcaatggattatgagagtgcgtatgagttgatagaaagatcttccatacacattgatgatgaatttacatacactgttgctcaagaaatcatagagcacgatgatattgaaccatgctctattgcagaatgtcaacaaagagtagattggcctaaatggaaagatgcaatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

177

Amino Acids

19.91

Weight (kDa)

5.13

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 422
AfiI CCNNNNNNNGG 3 cut(s) 88, 89, 90
AgeI ACCGGT 1 cut(s) 95
AgsI TTSAA 2 cut(s) 335, 470
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 1 cut(s) 286
AoxI GGCC 3 cut(s) 147, 176, 509
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 422
AseI ATTAAT 1 cut(s) 242
AsiGI ACCGGT 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 93
BanI GGYRCC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 1 cut(s) 532
BglII AGATCT 1 cut(s) 398
BisI GCNGC 2 cut(s) 54, 102
BlsI GCNGC 2 cut(s) 55, 103
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 3 cut(s) 94, 100, 156
BmsI GCATC 3 cut(s) 310, 314, 514
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 426
BsaJI CCNNGG 2 cut(s) 150, 203
BsaWI WCCGGW 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 89, 90
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 150, 203
BseGI GGATG 2 cut(s) 222, 325
BseLI CCNNNNNNNGG 3 cut(s) 88, 89, 90
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 3 cut(s) 149, 178, 511
BshNI GGYRCC 1 cut(s) 98
BshTI ACCGGT 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 459
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 2 cut(s) 65, 106
BslI CCNNNNNNNGG 3 cut(s) 88, 89, 90
BsmAI GTCTC 1 cut(s) 286
BsmFI GGGAC 2 cut(s) 65, 106
BsnI GGCC 3 cut(s) 149, 178, 511
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 3 cut(s) 38, 235, 398
BspACI CCGC 1 cut(s) 102
BspANI GGCC 3 cut(s) 149, 178, 511
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 3 cut(s) 94, 100, 156
BspT107I GGYRCC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 1 cut(s) 318
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 150, 203
BssMI GATC 3 cut(s) 38, 235, 398
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 293, 436
Bst6I CTCTTC 2 cut(s) 161, 206
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 2 cut(s) 222, 325
BstKTI GATC 3 cut(s) 41, 238, 401
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 3 cut(s) 38, 235, 398
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 398
BstYI RGATCY 1 cut(s) 398
BsuRI GGCC 3 cut(s) 149, 178, 511
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 222, 325
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 114, 432
Cac8I GCNNGC 1 cut(s) 66
CciI TCATGA 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 93
CspAI ACCGGT 1 cut(s) 95
CviAII CATG 3 cut(s) 269, 302, 474
CviJI RGCY 5 cut(s) 53, 149, 155, 178, 511
CviKI_1 RGCY 5 cut(s) 53, 149, 155, 178, 511
DdeI CTNAG 1 cut(s) 128
DpnI GATC 3 cut(s) 40, 237, 400
DpnII GATC 3 cut(s) 38, 235, 398
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
Eam1104I CTCTTC 2 cut(s) 161, 206
EarI CTCTTC 2 cut(s) 161, 206
Eco130I CCWWGG 1 cut(s) 203
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 93
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 203
EcoT22I ATGCAT 2 cut(s) 13, 307
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 3 cut(s) 272, 305, 477
FaqI GGGAC 2 cut(s) 65, 106
FatI CATG 3 cut(s) 268, 301, 473
Fnu4HI GCNGC 2 cut(s) 54, 102
FokI GGATG 2 cut(s) 229, 332
Fsp4HI GCNGC 2 cut(s) 54, 102
FspBI CTAG 1 cut(s) 532
GluI GCNGC 2 cut(s) 54, 102
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 3 cut(s) 149, 178, 511
HapII CCGG 1 cut(s) 96
Hin1II CATG 3 cut(s) 272, 305, 477
HincII GTYRAC 1 cut(s) 494
HindII GTYRAC 1 cut(s) 494
HinfI GANTC 2 cut(s) 259, 340
HpaII CCGG 1 cut(s) 96
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 2 cut(s) 286, 327
Hpy188III TCNNGA 3 cut(s) 269, 344, 443
Hpy8I GTNNAC 1 cut(s) 494
HpyCH4III ACNGT 2 cut(s) 293, 436
HpyCH4V TGCA 7 cut(s) 11, 56, 68, 119, 305, 485, 527
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 3 cut(s) 272, 305, 477
Kzo9I GATC 3 cut(s) 38, 235, 398
LmnI GCTCC 2 cut(s) 160, 328
LpnPI CCDG 6 cut(s) 18, 63, 78, 109, 299, 357
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 3 cut(s) 310, 314, 514
MaeI CTAG 1 cut(s) 532
MalI GATC 3 cut(s) 40, 237, 400
MboI GATC 3 cut(s) 38, 235, 398
MboII GAAGA 4 cut(s) 178, 220, 223, 393
MflI RGATCY 1 cut(s) 398
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 3 cut(s) 29, 276, 422
MnlI CCTC 9 cut(s) 104, 125, 128, 139, 162, 168, 207, 274, 310
Mph1103I ATGCAT 2 cut(s) 13, 307
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 1 cut(s) 96
NdeII GATC 3 cut(s) 38, 235, 398
NlaIII CATG 3 cut(s) 272, 305, 477
NlaIV GGNNCC 3 cut(s) 94, 100, 156
NsiI ATGCAT 2 cut(s) 13, 307
PagI TCATGA 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 259, 340
PinAI ACCGGT 1 cut(s) 95
PkrI GCNGC 2 cut(s) 55, 103
PshBI ATTAAT 1 cut(s) 242
PspN4I GGNNCC 3 cut(s) 94, 100, 156
PspPI GGNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 398
PvuII CAGCTG 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 414
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 2 cut(s) 54, 102
Sau3AI GATC 3 cut(s) 38, 235, 398
Sau96I GGNCC 1 cut(s) 93
SduI GDGCHC 1 cut(s) 459
SetI ASST 2 cut(s) 55, 139
SfaNI GCATC 3 cut(s) 310, 314, 514
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 3 cut(s) 29, 276, 422
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 532
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 2 cut(s) 293, 436
TaqI TCGA 1 cut(s) 188
TasI AATT 3 cut(s) 29, 276, 422
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 2 cut(s) 259, 340
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 2 cut(s) 121, 439
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 233, 435
TspRI CASTG 2 cut(s) 121, 439
VpaK11BI GGWCC 1 cut(s) 93
VspI ATTAAT 1 cut(s) 242
XapI RAATTY 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 1 cut(s) 532
Zsp2I ATGCAT 2 cut(s) 13, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.