Rmu_sc0003679.1_g000010

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003679.1
OG0000161
Physical Location & Seq
Forward (+)
39514 .. 40320
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003679.1_g000010.1.cds

Sequence Viewer

Length: 807 bp
atgaacctgacatttcacacttacgcatatttggttgcacagtatatatgcctattatgcccccacagcgcaccaaaatgggtcctcagagcgtggtttgtccccactctatctcagtttgatccccgcacttcacaatgtgaaagtgaagtgaaaacaattatcgatcttcagaaagtagcagatttgatgcctgatgcgtttactgatatcgcaaaagtgacgagatcacatataccagctgcaaacgtgcctgcaaggttagacatccccaacaaggggcacggtgccgcaaatagatgcattacaaccacacttagtggatgtgtggttgaggccgtggctccccaaaggaagagggggaggccacttggttcgatttacactcacgcaaggaagaagagggcgagtaaggcacaaaccgatccattaatcatcaatgtagtgaatccctctcatgagattgtctttgattacagttatgtccatgaatcaatactggaggacgctccgatgtttgaaatgattccagagaataaagaaatctcaatggattatgagagtgcgtatgagttgatagaaagatcttccatacacattaatgatgtatttgcatacactattgctcaagaaatcatagagcacgatgatattgaaccacgctctgttgcagaatgtcaacaaaaagcagattggcccaaatggaaagaagtaatccaggcagaattagattctctgacaaatagacaggtatttgttcccgtagtgctgaccccaccaactgtagagcctctaggacataaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

268

Amino Acids

30.29

Weight (kDa)

5.8

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AciI CCGC 2 cut(s) 127, 291
AclWI GGATC 2 cut(s) 116, 419
AcuI CTGAAG 1 cut(s) 155
AdeI CACNNNGTG 2 cut(s) 140, 320
AfiI CCNNNNNNNGG 3 cut(s) 277, 278, 279
AgsI TTSAA 2 cut(s) 521, 656
AjnI CCWGG 1 cut(s) 717
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 645
AlwI GGATC 2 cut(s) 116, 419
AoxI GGCC 3 cut(s) 336, 365, 695
ApeKI GCWGC 1 cut(s) 242
AseI ATTAAT 2 cut(s) 431, 600
Asp700I GAANNNNTTC 1 cut(s) 525
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 82, 696
AvaII GGWCC 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 645
BbvI GCAGC 1 cut(s) 229
BceAI ACGGC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 719
BfaI CTAG 1 cut(s) 794
BfmI CTRYAG 1 cut(s) 783
BglII AGATCT 1 cut(s) 584
BisI GCNGC 2 cut(s) 243, 291
BlsI GCNGC 2 cut(s) 244, 292
Bme1390I CCNGG 1 cut(s) 719
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 82, 696
BmiI GGNNCC 3 cut(s) 83, 289, 345
BmrFI CCNGG 1 cut(s) 719
BmsI GCATC 3 cut(s) 180, 187, 290
BpmI CTGGAG 1 cut(s) 521
BpuEI CTTGAG 1 cut(s) 612
Bsa29I ATCGAT 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 278, 279
Bse1I ACTGG 1 cut(s) 504
BseBI CCWGG 1 cut(s) 719
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 267, 329
BseLI CCNNNNNNNGG 3 cut(s) 277, 278, 279
BseMII CTCAG 2 cut(s) 100, 128
BseNI ACTGG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 1 cut(s) 229
BshFI GGCC 3 cut(s) 338, 367, 697
BshNI GGYRCC 1 cut(s) 287
BshVI ATCGAT 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 645
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 3 cut(s) 277, 278, 279
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 3 cut(s) 338, 367, 697
Bsp1286I GDGCHC 2 cut(s) 285, 645
Bsp143I GATC 5 cut(s) 121, 166, 227, 424, 584
BspACI CCGC 2 cut(s) 127, 291
BspANI GGCC 3 cut(s) 338, 367, 697
BspCNI CTCAG 2 cut(s) 99, 127
BspDI ATCGAT 1 cut(s) 165
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 3 cut(s) 83, 289, 345
BspPI GGATC 2 cut(s) 116, 419
BspT107I GGYRCC 1 cut(s) 287
BsrI ACTGG 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 5 cut(s) 121, 166, 227, 424, 584
Bst2UI CCWGG 1 cut(s) 719
Bst4CI ACNGT 4 cut(s) 42, 287, 479, 784
Bst6I CTCTTC 2 cut(s) 350, 395
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 86, 114, 317
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 2 cut(s) 267, 329
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 5 cut(s) 124, 169, 230, 427, 587
BstMBI GATC 5 cut(s) 121, 166, 227, 424, 584
BstMWI GCNNNNNNNGC 3 cut(s) 57, 66, 413
BstNI CCWGG 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 717
BstSFI CTRYAG 1 cut(s) 783
BstSLI GKGCMC 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 584
BstYI RGATCY 1 cut(s) 584
Bsu15I ATCGAT 1 cut(s) 165
BsuRI GGCC 3 cut(s) 338, 367, 697
BsuTUI ATCGAT 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 2 cut(s) 267, 329
Cac8I GCNNGC 1 cut(s) 255
CciI TCATGA 1 cut(s) 457
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 82, 696
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 1 cut(s) 515
CviAII CATG 2 cut(s) 458, 488
CviJI RGCY 6 cut(s) 242, 338, 344, 367, 697, 790
CviKI_1 RGCY 6 cut(s) 242, 338, 344, 367, 697, 790
DdeI CTNAG 3 cut(s) 86, 114, 317
DpnI GATC 5 cut(s) 123, 168, 229, 426, 586
DpnII GATC 5 cut(s) 121, 166, 227, 424, 584
DraIII CACNNNGTG 2 cut(s) 140, 320
Eam1104I CTCTTC 2 cut(s) 350, 395
EarI CTCTTC 2 cut(s) 350, 395
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 717
EcoRV GATATC 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 305
FaeI CATG 2 cut(s) 461, 491
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 457, 487
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 2 cut(s) 243, 291
FokI GGATG 2 cut(s) 254, 336
Fsp4HI GCNGC 2 cut(s) 243, 291
FspBI CTAG 1 cut(s) 794
GlaI GCGC 1 cut(s) 70
GluI GCNGC 2 cut(s) 243, 291
GsuI CTGGAG 1 cut(s) 521
HaeIII GGCC 3 cut(s) 338, 367, 697
HgaI GACGC 1 cut(s) 515
HhaI GCGC 1 cut(s) 71
Hin1II CATG 2 cut(s) 461, 491
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 680
HindII GTYRAC 1 cut(s) 680
HinfI GANTC 4 cut(s) 448, 491, 526, 731
Hpy166II GTNNAC 2 cut(s) 204, 680
Hpy188I TCNGA 4 cut(s) 89, 174, 513, 738
Hpy188III TCNNGA 3 cut(s) 458, 530, 629
Hpy8I GTNNAC 2 cut(s) 204, 680
HpyCH4III ACNGT 4 cut(s) 42, 287, 479, 784
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 6 cut(s) 38, 245, 257, 303, 614, 671
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 66, 413
HpyF3I CTNAG 3 cut(s) 86, 114, 317
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 2 cut(s) 461, 491
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 5 cut(s) 121, 166, 227, 424, 584
LmnI GCTCC 2 cut(s) 349, 514
LpnPI CCDG 9 cut(s) 20, 207, 252, 267, 485, 543, 704, 731, 734
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 3 cut(s) 180, 187, 290
MaeI CTAG 1 cut(s) 794
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 220
MalI GATC 5 cut(s) 123, 168, 229, 426, 586
MboI GATC 5 cut(s) 121, 166, 227, 424, 584
MboII GAAGA 5 cut(s) 161, 367, 409, 412, 579
MflI RGATCY 1 cut(s) 584
MhlI GDGCHC 2 cut(s) 285, 645
MluCI AATT 2 cut(s) 159, 725
MnlI CCTC 8 cut(s) 95, 328, 351, 357, 396, 463, 496, 801
Mph1103I ATGCAT 1 cut(s) 305
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 2 cut(s) 431, 600
MslI CAYNNNNRTG 2 cut(s) 76, 600
MspA1I CMGCKG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 719
MvaI CCWGG 1 cut(s) 719
MwoI GCNNNNNNNGC 3 cut(s) 57, 66, 413
NdeII GATC 5 cut(s) 121, 166, 227, 424, 584
NlaIII CATG 2 cut(s) 461, 491
NlaIV GGNNCC 3 cut(s) 83, 289, 345
NmuCI GTSAC 1 cut(s) 220
NsiI ATGCAT 1 cut(s) 305
PagI TCATGA 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 4 cut(s) 448, 491, 526, 731
PkrI GCNGC 2 cut(s) 244, 292
PpuMI RGGWCCY 1 cut(s) 82
PshBI ATTAAT 2 cut(s) 431, 600
Psp5II RGGWCCY 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 717
PspGI CCWGG 1 cut(s) 717
PspN4I GGNNCC 3 cut(s) 83, 289, 345
PspPI GGNCC 2 cut(s) 82, 696
PspPPI RGGWCCY 1 cut(s) 82
PsuI RGATCY 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 242
RseI CAYNNNNRTG 2 cut(s) 76, 600
SaqAI TTAA 2 cut(s) 431, 600
SatI GCNGC 2 cut(s) 243, 291
Sau3AI GATC 5 cut(s) 121, 166, 227, 424, 584
Sau96I GGNCC 2 cut(s) 82, 696
ScrFI CCNGG 1 cut(s) 719
SduI GDGCHC 2 cut(s) 285, 645
SetI ASST 5 cut(s) 9, 244, 252, 263, 753
SfaNI GCATC 3 cut(s) 180, 187, 290
SfcI CTRYAG 1 cut(s) 783
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 2 cut(s) 76, 600
SmlI CTYRAG 1 cut(s) 627
SmoI CTYRAG 1 cut(s) 627
Sse9I AATT 2 cut(s) 159, 725
SsiI CCGC 2 cut(s) 127, 291
SspMI CTAG 1 cut(s) 794
StyD4I CCNGG 1 cut(s) 717
TaaI ACNGT 4 cut(s) 42, 287, 479, 784
TaiI ACGT 1 cut(s) 252
TaqI TCGA 2 cut(s) 165, 377
TasI AATT 2 cut(s) 159, 725
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 4 cut(s) 448, 491, 526, 731
Tru1I TTAA 2 cut(s) 431, 600
Tru9I TTAA 2 cut(s) 431, 600
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 17, 504
VpaK11BI GGWCC 1 cut(s) 82
VspI ATTAAT 2 cut(s) 431, 600
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 1 cut(s) 794
Zsp2I ATGCAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.