Rmu_sc0007779.1_g000001

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007779.1
Physical Location & Seq
Reverse (-)
1 .. 916
916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007779.1_g000001.1.cds

Sequence Viewer

Length: 571 bp
atgagcctgacatttcacacttatgcatatttggttgcgcctattgcgcccccacagcgcaccaaaatgggtcctcagagacgattaagtatttatgttggatacgaatttccaacaattatccgctatttggaacccttgacaggcgatctctttaccgctagatttgcggattgtcactttgatgagacagtcttcctatcgttagggggagatagaaaaaaggattttccaagggaacgacaggaattgtcgtggtttgttcccactctatctcattttgatccccgcacttcacaaagtgaaagtgaagtgaaaagaataaccgatattcagaacgtaacagattcgacgcctgatgcgtttactgatatcgcaaaagtgacgagatcacatataccagctgcaaatgtgcgtgcaaggttagaagtccccaacaaggggcacggtgcctcagatagaggcactgcaactacacttagtggaggtgtggttgaagccgtggctccccaaaggaagaggtggaggtcacttggttcgattgacactcacccaaggaagaagagggcga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

190

Amino Acids

21.41

Weight (kDa)

9.75

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AciI CCGC 4 cut(s) 124, 159, 170, 289
AclWI GGATC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 353
AdeI CACNNNGTG 2 cut(s) 302, 482
AfiI CCNNNNNNNGG 5 cut(s) 130, 143, 439, 440, 441
AgsI TTSAA 1 cut(s) 497
AluBI AGCT 1 cut(s) 404
AluI AGCT 1 cut(s) 404
Alw26I GTCTC 2 cut(s) 73, 182
AlwI GGATC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 3 cut(s) 40, 49, 60
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 542
AvaII GGWCC 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 447
BanI GGYRCC 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 391
BceAI ACGGC 1 cut(s) 485
BciVI GTATCC 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 73, 182
BfaI CTAG 1 cut(s) 162
BfuI GTATCC 1 cut(s) 95
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 4 cut(s) 72, 135, 451, 507
BmsI GCATC 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 233, 501, 554
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 5 cut(s) 130, 143, 439, 440, 441
BseDI CCNNGG 3 cut(s) 233, 501, 554
BseLI CCNNNNNNNGG 5 cut(s) 130, 143, 439, 440, 441
BseMII CTCAG 2 cut(s) 89, 468
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 1 cut(s) 391
BshNI GGYRCC 1 cut(s) 449
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 5 cut(s) 130, 143, 439, 440, 441
BsmAI GTCTC 2 cut(s) 73, 182
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 3 cut(s) 148, 283, 389
BspACI CCGC 4 cut(s) 124, 159, 170, 289
BspCNI CTCAG 2 cut(s) 88, 467
BspLI GGNNCC 4 cut(s) 72, 135, 451, 507
BspPI GGATC 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 449
BssECI CCNNGG 3 cut(s) 233, 501, 554
BssMI GATC 3 cut(s) 148, 283, 389
BssNI GRCGYC 1 cut(s) 353
BssT1I CCWWGG 2 cut(s) 233, 554
Bst4CI ACNGT 2 cut(s) 193, 449
Bst6I CTCTTC 2 cut(s) 512, 557
BstACI GRCGYC 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 3 cut(s) 75, 454, 479
BstDSI CCRYGG 1 cut(s) 501
BstHHI GCGC 3 cut(s) 40, 49, 60
BstKTI GATC 3 cut(s) 151, 286, 392
BstMAI GTCTC 2 cut(s) 73, 182
BstMBI GATC 3 cut(s) 148, 283, 389
BstMWI GCNNNNNNNGC 4 cut(s) 44, 46, 55, 167
BstSLI GKGCMC 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 1 cut(s) 187
BsuI GTATCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 501
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 465
Cac8I GCNNGC 1 cut(s) 417
CfoI GCGC 3 cut(s) 40, 49, 60
Cfr13I GGNCC 1 cut(s) 71
CseI GACGC 1 cut(s) 361
CviJI RGCY 4 cut(s) 6, 404, 500, 506
CviKI_1 RGCY 4 cut(s) 6, 404, 500, 506
DdeI CTNAG 3 cut(s) 75, 454, 479
DpnI GATC 3 cut(s) 150, 285, 391
DpnII GATC 3 cut(s) 148, 283, 389
DraIII CACNNNGTG 2 cut(s) 302, 482
Eam1104I CTCTTC 2 cut(s) 512, 557
EarI CTCTTC 2 cut(s) 512, 557
Eco130I CCWWGG 2 cut(s) 233, 554
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 71
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 2 cut(s) 233, 554
EcoT22I ATGCAT 1 cut(s) 28
ErhI CCWWGG 2 cut(s) 233, 554
Esp3I CGTCTC 1 cut(s) 73
FaiI YATR 5 cut(s) 24, 28, 96, 396, 398
FaqI GGGAC 1 cut(s) 416
FauI CCCGC 1 cut(s) 296
Fnu4HI GCNGC 1 cut(s) 405
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 1 cut(s) 162
GlaI GCGC 3 cut(s) 39, 48, 59
GluI GCNGC 1 cut(s) 405
HgaI GACGC 1 cut(s) 361
HhaI GCGC 3 cut(s) 40, 49, 60
Hin1I GRCGYC 1 cut(s) 353
Hin6I GCGC 3 cut(s) 38, 47, 58
HinP1I GCGC 3 cut(s) 38, 47, 58
HinfI GANTC 1 cut(s) 347
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 3 cut(s) 78, 336, 457
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 1 cut(s) 355
HpyCH4III ACNGT 2 cut(s) 193, 449
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 4 cut(s) 26, 407, 419, 470
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 46, 55, 167
HpyF3I CTNAG 3 cut(s) 75, 454, 479
HpySE526I ACGT 1 cut(s) 339
Hsp92I GRCGYC 1 cut(s) 353
HspAI GCGC 3 cut(s) 38, 47, 58
Kzo9I GATC 3 cut(s) 148, 283, 389
LmnI GCTCC 1 cut(s) 511
LpnPI CCDG 5 cut(s) 20, 129, 230, 369, 414
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 4 cut(s) 176, 340, 382, 528
MalI GATC 3 cut(s) 150, 285, 391
MboI GATC 3 cut(s) 148, 283, 389
MboII GAAGA 3 cut(s) 187, 529, 571
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 3 cut(s) 107, 117, 248
MmeI TCCRAC 2 cut(s) 79, 137
MnlI CCTC 7 cut(s) 84, 455, 463, 479, 513, 519, 558
Mph1103I ATGCAT 1 cut(s) 28
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 3 cut(s) 21, 65, 183
MspA1I CMGCKG 1 cut(s) 404
MwoI GCNNNNNNNGC 4 cut(s) 44, 46, 55, 167
NdeII GATC 3 cut(s) 148, 283, 389
NlaIV GGNNCC 4 cut(s) 72, 135, 451, 507
NmuCI GTSAC 3 cut(s) 176, 382, 528
NsiI ATGCAT 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PfeI GAWTC 1 cut(s) 347
PkrI GCNGC 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 71
PspN4I GGNNCC 4 cut(s) 72, 135, 451, 507
PspPI GGNCC 1 cut(s) 71
PspPPI RGGWCCY 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 404
RseI CAYNNNNRTG 3 cut(s) 21, 65, 183
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 3 cut(s) 148, 283, 389
Sau96I GGNCC 1 cut(s) 71
SduI GDGCHC 1 cut(s) 447
SetI ASST 6 cut(s) 342, 406, 425, 490, 524, 530
SfaNI GCATC 1 cut(s) 349
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 3 cut(s) 21, 65, 183
Sse9I AATT 3 cut(s) 107, 117, 248
SsiI CCGC 4 cut(s) 124, 159, 170, 289
SspMI CTAG 1 cut(s) 162
StyI CCWWGG 2 cut(s) 233, 554
TaaI ACNGT 2 cut(s) 193, 449
TaiI ACGT 1 cut(s) 342
TaqI TCGA 2 cut(s) 350, 539
TasI AATT 3 cut(s) 107, 117, 248
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 3 cut(s) 176, 382, 528
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 3 cut(s) 176, 382, 528
TspRI CASTG 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 1 cut(s) 107
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.