Rmu_sc0002072.1_g000022

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002072.1
OG0000161
Physical Location & Seq
Reverse (-)
83499 .. 84023
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002072.1_g000022.1.cds

Sequence Viewer

Length: 525 bp
atgatgggtgataccttcactgcacggtttgcaaattgccattttgatgagacaatattcctgccgttagggggagataagactgttccaaatgaacgtcatgaattaatgtggactgtagccagtatatctcatcttgatcctcgtactaaagaaagtgaaattgaagtacgaaggattctgcaccttcaaaatattgctaacacaatgcctgatgcattcactgacatagcaaaagtgacaatatcacatatcccagcaataaatgcaccagcaagaattaatgtccaaattggacaaactaatgtggcggccaatgagccatttgttgcacgcctgaagcgtggcagacctataggttcaaaagattcagttcccagaaacaggaaatcaaaggcacatctgaatccaaatgaaatcgtccctgaagagaatattgggcaagacattaatgtccgatccacaattcatgattctgtgactacagaagaggaaaatgacatcggtgagacactagcccattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

174

Amino Acids

19.4

Weight (kDa)

5.89

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 452
AciI CCGC 1 cut(s) 311
AclWI GGATC 2 cut(s) 134, 453
AcoI YGGCCR 1 cut(s) 312
AcuI CTGAAG 2 cut(s) 359, 447
AfaI GTAC 2 cut(s) 148, 171
AfiI CCNNNNNNNGG 2 cut(s) 71, 384
AgsI TTSAA 3 cut(s) 167, 191, 363
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
Alw26I GTCTC 2 cut(s) 44, 503
AlwI GGATC 2 cut(s) 134, 453
AoxI GGCC 1 cut(s) 312
AseI ATTAAT 3 cut(s) 107, 282, 450
AsuHPI GGTGA 2 cut(s) 20, 518
BceAI ACGGC 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 44, 503
BfaI CTAG 1 cut(s) 515
BfmI CTRYAG 3 cut(s) 117, 354, 483
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmsI GCATC 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 384
Bse1I ACTGG 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 71, 384
BseNI ACTGG 1 cut(s) 123
BseYI CCCAGC 1 cut(s) 256
BsgI GTGCAG 2 cut(s) 6, 167
BshFI GGCC 1 cut(s) 314
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 2 cut(s) 71, 384
BsmAI GTCTC 2 cut(s) 44, 503
BsmFI GGGAC 1 cut(s) 407
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 139, 458
BspACI CCGC 1 cut(s) 311
BspANI GGCC 1 cut(s) 314
BspHI TCATGA 2 cut(s) 100, 469
BspPI GGATC 2 cut(s) 134, 453
BsrI ACTGG 1 cut(s) 123
BssMI GATC 2 cut(s) 139, 458
Bst4CI ACNGT 3 cut(s) 27, 85, 118
Bst6I CTCTTC 2 cut(s) 423, 483
BstAPI GCANNNNNTGC 2 cut(s) 29, 266
BstC8I GCNNGC 1 cut(s) 334
BstKTI GATC 2 cut(s) 142, 461
BstMAI GTCTC 2 cut(s) 44, 503
BstMBI GATC 2 cut(s) 139, 458
BstMWI GCNNNNNNNGC 2 cut(s) 29, 266
BstSFI CTRYAG 3 cut(s) 117, 354, 483
BsuRI GGCC 1 cut(s) 314
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 222
Cac8I GCNNGC 1 cut(s) 334
CciI TCATGA 2 cut(s) 100, 469
Csp6I GTAC 2 cut(s) 147, 170
CviAII CATG 2 cut(s) 101, 470
CviJI RGCY 4 cut(s) 122, 314, 322, 518
CviKI_1 RGCY 4 cut(s) 122, 314, 322, 518
CviQI GTAC 2 cut(s) 147, 170
DpnI GATC 2 cut(s) 141, 460
DpnII GATC 2 cut(s) 139, 458
DrdI GACNNNNNNGTC 1 cut(s) 452
DseDI GACNNNNNNGTC 1 cut(s) 452
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 423, 483
EarI CTCTTC 2 cut(s) 423, 483
Eco57I CTGAAG 2 cut(s) 359, 447
EcoT22I ATGCAT 1 cut(s) 220
FaeI CATG 2 cut(s) 104, 473
FaiI YATR 6 cut(s) 102, 128, 230, 252, 356, 471
FaqI GGGAC 1 cut(s) 407
FatI CATG 2 cut(s) 100, 469
Fnu4HI GCNGC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 515
GluI GCNGC 1 cut(s) 312
GsaI CCCAGC 1 cut(s) 260
HaeIII GGCC 1 cut(s) 314
Hin1II CATG 2 cut(s) 104, 473
HinfI GANTC 4 cut(s) 178, 368, 406, 473
HphI GGTGA 2 cut(s) 20, 518
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 405, 458
Hpy188III TCNNGA 3 cut(s) 101, 137, 470
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 3 cut(s) 25, 168, 197
HpyCH4III ACNGT 3 cut(s) 27, 85, 118
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 6 cut(s) 23, 32, 184, 218, 269, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 266
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 2 cut(s) 104, 473
Kzo9I GATC 2 cut(s) 139, 458
LpnPI CCDG 9 cut(s) 74, 136, 225, 270, 285, 350, 370, 391, 438
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 515
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 238, 478
MalI GATC 2 cut(s) 141, 460
MboI GATC 2 cut(s) 139, 458
MboII GAAGA 2 cut(s) 440, 500
MluCI AATT 6 cut(s) 34, 104, 162, 279, 291, 465
MnlI CCTC 2 cut(s) 153, 484
Mph1103I ATGCAT 1 cut(s) 220
MseI TTAA 4 cut(s) 107, 282, 450, 523
MslI CAYNNNNRTG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 29, 266
NdeII GATC 2 cut(s) 139, 458
NlaIII CATG 2 cut(s) 104, 473
NmuCI GTSAC 2 cut(s) 238, 478
NsiI ATGCAT 1 cut(s) 220
PagI TCATGA 2 cut(s) 100, 469
PcsI WCGNNNNNNNCGW 1 cut(s) 340
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 4 cut(s) 178, 368, 406, 473
PkrI GCNGC 1 cut(s) 313
PshBI ATTAAT 3 cut(s) 107, 282, 450
PspFI CCCAGC 1 cut(s) 256
RsaI GTAC 2 cut(s) 148, 171
RsaNI GTAC 2 cut(s) 147, 170
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 4 cut(s) 107, 282, 450, 523
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 2 cut(s) 139, 458
SetI ASST 5 cut(s) 17, 100, 189, 355, 361
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 3 cut(s) 117, 354, 483
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 6 cut(s) 34, 104, 162, 279, 291, 465
SsiI CCGC 1 cut(s) 311
SspI AATATT 3 cut(s) 57, 196, 436
SspMI CTAG 1 cut(s) 515
TaaI ACNGT 3 cut(s) 27, 85, 118
TaiI ACGT 1 cut(s) 100
TasI AATT 6 cut(s) 34, 104, 162, 279, 291, 465
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 4 cut(s) 178, 368, 406, 473
Tru1I TTAA 4 cut(s) 107, 282, 450, 523
Tru9I TTAA 4 cut(s) 107, 282, 450, 523
TscAI CASTG 2 cut(s) 25, 229
TseFI GTSAC 2 cut(s) 238, 478
Tsp45I GTSAC 2 cut(s) 238, 478
TspDTI ATGAA 4 cut(s) 108, 117, 429, 458
TspRI CASTG 2 cut(s) 25, 229
VspI ATTAAT 3 cut(s) 107, 282, 450
XspI CTAG 1 cut(s) 515
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.