Rmu_sc0008848.1_g000001

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008848.1
OG0000161
Physical Location & Seq
Reverse (-)
1 .. 871
871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008848.1_g000001.1.cds

Sequence Viewer

Length: 702 bp
atgggtcatcagagacaattaagtatttatgttggatatgaatccccaacaactatccgctatttggaacccttgacaggcgatctctttaccgctagatttgcggactgtcagtttgatgagacaaacgtaacagattcgatacctgatgcgtttactgatatcgcaaaagtgacgagatcacatataccagttgcaaatgtgcctgcaaggttagaagtccccaacaaggggcacggtgccgcagatagaggcactgcaaccacacttagtggaggtgtggttgaggccgttgctccccaaaggaagagggggagaccacttagttcgattgacactcacccaaggaagaagagggtgagtaaggtacaaaccgatcaattaatcatcaatgtagagaatccctctcatgagattgtctctgattacagttatgtccatgaatcaatactggagcacgttccgatgtttgaaataattccaatgaacaaagaaatctcattggattatgagagtgcgtatgagttgatagaaagatcttccataaacattgatgatgaatttgcatacactgttgctcaagaaatcatagagcacgatgatatcgaaccatgctctgttgcagaatgtcaacaaagagtagattggcctaaatggaaagaagcaatccaggcagaattagattctctgataaagagacag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

234

Amino Acids

26.42

Weight (kDa)

4.97

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AciI CCGC 4 cut(s) 58, 93, 104, 243
AcsI RAATTY 1 cut(s) 560
AdeI CACNNNGTG 1 cut(s) 272
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 5 cut(s) 64, 77, 229, 230, 231
AgsI TTSAA 1 cut(s) 473
AjnI CCWGG 1 cut(s) 669
Alw21I GWGCWC 2 cut(s) 459, 597
Alw26I GTCTC 5 cut(s) 7, 116, 310, 424, 691
AoxI GGCC 2 cut(s) 288, 647
ApoI RAATTY 1 cut(s) 560
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AseI ATTAAT 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 477
AsuHPI GGTGA 2 cut(s) 332, 370
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 239
Bbv12I GWGCWC 2 cut(s) 459, 597
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 671
BcoDI GTCTC 5 cut(s) 7, 116, 310, 424, 691
BfaI CTAG 1 cut(s) 96
BglII AGATCT 1 cut(s) 536
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 671
BmiI GGNNCC 2 cut(s) 69, 241
BmrFI CCNGG 1 cut(s) 671
BmsI GCATC 1 cut(s) 139
BplI GAGNNNNNCTC 4 cut(s) 389, 421, 404, 436
BpmI CTGGAG 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 564
BsaBI GATNNNNATC 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 344
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 77, 229, 230, 231
Bse1I ACTGG 2 cut(s) 191, 456
Bse8I GATNNNNATC 1 cut(s) 40
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 1 cut(s) 344
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 5 cut(s) 64, 77, 229, 230, 231
BseNI ACTGG 2 cut(s) 191, 456
BseSI GKGCMC 1 cut(s) 237
BshFI GGCC 2 cut(s) 290, 649
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 2 cut(s) 459, 597
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 5 cut(s) 64, 77, 229, 230, 231
BsmAI GTCTC 5 cut(s) 7, 116, 310, 424, 691
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 2 cut(s) 290, 649
Bso31I GGTCTC 1 cut(s) 310
Bsp1286I GDGCHC 3 cut(s) 237, 459, 597
Bsp143I GATC 4 cut(s) 82, 179, 376, 536
BspACI CCGC 4 cut(s) 58, 93, 104, 243
BspANI GGCC 2 cut(s) 290, 649
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 69, 241
BspT107I GGYRCC 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 310
BsrI ACTGG 2 cut(s) 191, 456
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 4 cut(s) 82, 179, 376, 536
BssT1I CCWWGG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 4 cut(s) 110, 239, 431, 574
Bst6I CTCTTC 2 cut(s) 302, 347
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 2 cut(s) 269, 323
BstKTI GATC 4 cut(s) 85, 182, 379, 539
BstMAI GTCTC 5 cut(s) 7, 116, 310, 424, 691
BstMBI GATC 4 cut(s) 82, 179, 376, 536
BstMWI GCNNNNNNNGC 2 cut(s) 101, 671
BstNI CCWGG 1 cut(s) 671
BstSCI CCNGG 1 cut(s) 669
BstSLI GKGCMC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 536
BstYI RGATCY 1 cut(s) 536
BsuRI GGCC 2 cut(s) 290, 649
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 570
Cac8I GCNNGC 1 cut(s) 207
CciI TCATGA 1 cut(s) 409
Csp6I GTAC 1 cut(s) 368
CviAII CATG 3 cut(s) 410, 440, 612
CviJI RGCY 2 cut(s) 290, 649
CviKI_1 RGCY 2 cut(s) 290, 649
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 2 cut(s) 269, 323
DpnI GATC 4 cut(s) 84, 181, 378, 538
DpnII GATC 4 cut(s) 82, 179, 376, 536
DraIII CACNNNGTG 1 cut(s) 272
Eam1104I CTCTTC 2 cut(s) 302, 347
EarI CTCTTC 2 cut(s) 302, 347
Eco130I CCWWGG 1 cut(s) 344
Eco31I GGTCTC 1 cut(s) 310
Eco32I GATATC 2 cut(s) 163, 604
EcoRII CCWGG 1 cut(s) 669
EcoRV GATATC 2 cut(s) 163, 604
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 3 cut(s) 413, 443, 615
FaqI GGGAC 1 cut(s) 206
FatI CATG 3 cut(s) 409, 439, 611
Fnu4HI GCNGC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 473
HaeIII GGCC 2 cut(s) 290, 649
Hin1II CATG 3 cut(s) 413, 443, 615
HincII GTYRAC 1 cut(s) 632
HindII GTYRAC 1 cut(s) 632
HinfI GANTC 5 cut(s) 41, 137, 400, 443, 683
HphI GGTGA 2 cut(s) 332, 370
Hpy166II GTNNAC 2 cut(s) 156, 632
Hpy188I TCNGA 4 cut(s) 12, 424, 465, 690
Hpy188III TCNNGA 2 cut(s) 410, 581
Hpy8I GTNNAC 2 cut(s) 156, 632
HpyCH4III ACNGT 4 cut(s) 110, 239, 431, 574
HpyCH4IV ACGT 2 cut(s) 129, 459
HpyCH4V TGCA 5 cut(s) 197, 209, 260, 566, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 671
HpyF3I CTNAG 2 cut(s) 269, 323
HpySE526I ACGT 2 cut(s) 129, 459
Hsp92II CATG 3 cut(s) 413, 443, 615
Kzo9I GATC 4 cut(s) 82, 179, 376, 536
LmnI GCTCC 2 cut(s) 301, 454
LpnPI CCDG 7 cut(s) 63, 159, 204, 219, 437, 656, 683
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 96
MaeII ACGT 2 cut(s) 129, 459
MaeIII GTNAC 2 cut(s) 130, 172
MalI GATC 4 cut(s) 84, 181, 378, 538
MboI GATC 4 cut(s) 82, 179, 376, 536
MboII GAAGA 4 cut(s) 319, 361, 364, 531
MflI RGATCY 1 cut(s) 536
MhlI GDGCHC 3 cut(s) 237, 459, 597
MluCI AATT 5 cut(s) 17, 380, 477, 560, 677
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 6 cut(s) 245, 269, 280, 303, 348, 415
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 2 cut(s) 20, 383
MspR9I CCNGG 1 cut(s) 671
MvaI CCWGG 1 cut(s) 671
MwoI GCNNNNNNNGC 2 cut(s) 101, 671
NdeII GATC 4 cut(s) 82, 179, 376, 536
NlaIII CATG 3 cut(s) 413, 443, 615
NlaIV GGNNCC 2 cut(s) 69, 241
NmuCI GTSAC 1 cut(s) 172
PagI TCATGA 1 cut(s) 409
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 5 cut(s) 41, 137, 400, 443, 683
PkrI GCNGC 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 2 cut(s) 69, 241
PsuI RGATCY 1 cut(s) 536
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SaqAI TTAA 2 cut(s) 20, 383
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 4 cut(s) 82, 179, 376, 536
ScrFI CCNGG 1 cut(s) 671
SduI GDGCHC 3 cut(s) 237, 459, 597
SetI ASST 6 cut(s) 132, 148, 215, 280, 369, 462
SfaNI GCATC 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 5 cut(s) 17, 380, 477, 560, 677
SsiI CCGC 4 cut(s) 58, 93, 104, 243
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 669
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 4 cut(s) 110, 239, 431, 574
TaiI ACGT 2 cut(s) 132, 462
TaqI TCGA 3 cut(s) 140, 329, 606
TasI AATT 5 cut(s) 17, 380, 477, 560, 677
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 5 cut(s) 41, 137, 400, 443, 683
Tru1I TTAA 2 cut(s) 20, 383
Tru9I TTAA 2 cut(s) 20, 383
TscAI CASTG 2 cut(s) 262, 577
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 4 cut(s) 54, 456, 500, 573
TspRI CASTG 2 cut(s) 262, 577
VspI ATTAAT 1 cut(s) 383
XapI RAATTY 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.