Rmu_sc0001124.1_g000020

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001124.1
OG0000161
Physical Location & Seq
Forward (+)
71038 .. 71520
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001124.1_g000020.1.cds

Sequence Viewer

Length: 483 bp
atgttttctgatatcgtaaaagtgacgagatcacatatactagctgcaaatgtgcatgcaaggttagaagtccccaacaaggggcatggtgtagtagatagaggcactgcaaccacacttagtggaggtgtggttgaggccgtggctccccaaaggaagagggggaggccacctggttcgattgacactcacccaaggaagaagagggcgagtaaggcacaaactgatcaattaattatcaacgtagagaatcattctcatgagattgtctctaattatagttatgtccatgaatcaatactggaggacggtccgatgtttgaaatgattccagagaacaaagaaatctcaatggattatgagagtgcgtatgagttgatagaaagatctttcataaacattgatgatgaatttgcatacactgttgctcaagaaattacaaagcacgatgatatcgaaccacgctctgttgcaaaatgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

5.73

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 410
AdeI CACNNNGTG 1 cut(s) 122
AfiI CCNNNNNNNGG 3 cut(s) 79, 80, 81
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 274
AoxI GGCC 2 cut(s) 138, 167
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 410
AseI ATTAAT 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 174
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 1 cut(s) 41
BglII AGATCT 1 cut(s) 386
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 174
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BpmI CTGGAG 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 141, 194
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 80, 81
Bse1I ACTGG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 141, 194
BseLI CCNNNNNNNGG 3 cut(s) 79, 80, 81
BseNI ACTGG 1 cut(s) 306
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 2 cut(s) 140, 169
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 79, 80, 81
BsmAI GTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 2 cut(s) 140, 169
Bsp143I GATC 3 cut(s) 29, 226, 386
BspANI GGCC 2 cut(s) 140, 169
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 147
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 141, 194
BssMI GATC 3 cut(s) 29, 226, 386
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 311, 424
Bst6I CTCTTC 2 cut(s) 152, 197
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 119
BstDSI CCRYGG 1 cut(s) 141
BstKTI GATC 3 cut(s) 32, 229, 389
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 3 cut(s) 29, 226, 386
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 2 cut(s) 140, 169
BtgI CCRYGG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 105, 420
Cac8I GCNNGC 1 cut(s) 57
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 311
CpoI CGGWCCG 1 cut(s) 311
CsiI ACCWGGT 1 cut(s) 172
CspI CGGWCCG 1 cut(s) 311
CviAII CATG 4 cut(s) 56, 86, 260, 290
CviJI RGCY 4 cut(s) 44, 140, 146, 169
CviKI_1 RGCY 4 cut(s) 44, 140, 146, 169
DdeI CTNAG 1 cut(s) 119
DpnI GATC 3 cut(s) 31, 228, 388
DpnII GATC 3 cut(s) 29, 226, 386
DraIII CACNNNGTG 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 152, 197
EarI CTCTTC 2 cut(s) 152, 197
Eco130I CCWWGG 1 cut(s) 194
Eco32I GATATC 2 cut(s) 13, 454
Eco47I GGWCC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 172
EcoRV GATATC 2 cut(s) 13, 454
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 4 cut(s) 59, 89, 263, 293
FaqI GGGAC 1 cut(s) 56
FatI CATG 4 cut(s) 55, 85, 259, 289
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 2 cut(s) 140, 169
Hin1II CATG 4 cut(s) 59, 89, 263, 293
HinfI GANTC 3 cut(s) 250, 293, 328
HphI GGTGA 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 10, 315
Hpy188III TCNNGA 3 cut(s) 260, 332, 431
HpyCH4III ACNGT 2 cut(s) 311, 424
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 6 cut(s) 47, 55, 59, 110, 416, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 4 cut(s) 59, 89, 263, 293
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 3 cut(s) 29, 226, 386
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 159, 186, 287, 345
Lsp1109I GCAGC 1 cut(s) 31
MabI ACCWGGT 1 cut(s) 172
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 22
MalI GATC 3 cut(s) 31, 228, 388
MboI GATC 3 cut(s) 29, 226, 386
MboII GAAGA 3 cut(s) 169, 211, 214
MflI RGATCY 1 cut(s) 386
MluCI AATT 5 cut(s) 230, 234, 274, 410, 435
MnlI CCTC 7 cut(s) 95, 119, 130, 153, 159, 198, 298
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 2 cut(s) 233, 481
MslI CAYNNNNRTG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 3 cut(s) 29, 226, 386
NlaIII CATG 4 cut(s) 59, 89, 263, 293
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 22
NspI RCATGY 1 cut(s) 59
PaeI GCATGC 1 cut(s) 59
PagI TCATGA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 3 cut(s) 250, 293, 328
PkrI GCNGC 1 cut(s) 46
PshBI ATTAAT 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 311
PsuI RGATCY 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 258
Rsr2I CGGWCCG 1 cut(s) 311
RsrII CGGWCCG 1 cut(s) 311
SaqAI TTAA 2 cut(s) 233, 481
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 29, 226, 386
Sau96I GGNCC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 174
SetI ASST 5 cut(s) 46, 65, 130, 175, 246
SexAI ACCWGGT 1 cut(s) 172
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
SphI GCATGC 1 cut(s) 59
Sse9I AATT 5 cut(s) 230, 234, 274, 410, 435
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 311, 424
TaiI ACGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 179, 456
TasI AATT 5 cut(s) 230, 234, 274, 410, 435
TfiI GAWTC 3 cut(s) 250, 293, 328
Tru1I TTAA 2 cut(s) 233, 481
Tru9I TTAA 2 cut(s) 233, 481
TscAI CASTG 2 cut(s) 112, 427
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 306, 382, 423
TspRI CASTG 2 cut(s) 112, 427
VpaK11BI GGWCC 1 cut(s) 311
VspI ATTAAT 1 cut(s) 233
XapI RAATTY 1 cut(s) 410
XceI RCATGY 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.