Rmu_sc0008578.1_g000003

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008578.1
OG0000161
Physical Location & Seq
Reverse (-)
25194 .. 25529
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008578.1_g000003.1.cds

Sequence Viewer

Length: 336 bp
atgcctgatgcgtttactgatatctcaaaagtgacgagatcacatataccaactgtaaatgtgcctgcaaggttagaagtccccaacaagaggcatggtgccgcagataaaggcactacaaccacacttagtggaggtatggttgaggtcgtggctcctcaaaggaagagggggaggccactaggttcgattgacactcacccaaggaagaagagggcgagtaaggcacaaaccgatccattaatcatcaatgtagagaatccctctcatgagattgtctctgattatagttatgtccatgaatcaatactggaggacgctccgatgtttgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

111

Amino Acids

12.21

Weight (kDa)

8.1

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 230
AoxI GGCC 1 cut(s) 176
AseI ATTAAT 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 191
BanI GGYRCC 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmiI GGNNCC 2 cut(s) 100, 156
BplI GAGNNNNNCTC 4 cut(s) 248, 280, 263, 295
BpmI CTGGAG 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 98
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 38, 235
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 178
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 100, 156
BspPI GGATC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 38, 235
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 2 cut(s) 161, 206
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 128
BstKTI GATC 2 cut(s) 41, 238
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 2 cut(s) 38, 235
BstMWI GCNNNNNNNGC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 66
CciI TCATGA 1 cut(s) 268
CseI GACGC 1 cut(s) 326
CviAII CATG 3 cut(s) 95, 269, 299
CviJI RGCY 2 cut(s) 155, 178
CviKI_1 RGCY 2 cut(s) 155, 178
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 40, 237
DpnII GATC 2 cut(s) 38, 235
DraIII CACNNNGTG 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 161, 206
EarI CTCTTC 2 cut(s) 161, 206
Eco130I CCWWGG 1 cut(s) 203
Eco32I GATATC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 3 cut(s) 98, 272, 302
FaiI YATR 8 cut(s) 45, 47, 96, 140, 270, 288, 294, 300
FaqI GGGAC 1 cut(s) 65
FatI CATG 3 cut(s) 94, 268, 298
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 182
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 1 cut(s) 178
HgaI GACGC 1 cut(s) 326
Hin1II CATG 3 cut(s) 98, 272, 302
HinfI GANTC 2 cut(s) 259, 302
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 2 cut(s) 283, 324
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 15
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 3 cut(s) 98, 272, 302
Kzo9I GATC 2 cut(s) 38, 235
LmnI GCTCC 2 cut(s) 160, 325
LpnPI CCDG 3 cut(s) 18, 78, 296
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 40, 237
MboI GATC 2 cut(s) 38, 235
MboII GAAGA 3 cut(s) 178, 220, 223
MnlI CCTC 9 cut(s) 84, 128, 139, 162, 168, 168, 207, 274, 307
MseI TTAA 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 2 cut(s) 38, 235
NlaIII CATG 3 cut(s) 98, 272, 302
NlaIV GGNNCC 2 cut(s) 100, 156
NmuCI GTSAC 1 cut(s) 31
PagI TCATGA 1 cut(s) 268
PfeI GAWTC 2 cut(s) 259, 302
PkrI GCNGC 1 cut(s) 103
PshBI ATTAAT 1 cut(s) 242
PspN4I GGNNCC 2 cut(s) 100, 156
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 2 cut(s) 38, 235
SetI ASST 4 cut(s) 74, 139, 150, 187
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 182
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 188
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 2 cut(s) 259, 302
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 315
VspI ATTAAT 1 cut(s) 242
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.